PAG-IX: POSTERS

PAG-IX   Plant & Animal Genome IX Conference

Town & Country Hotel, San Diego, CA, January 13-17, 2001.


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WORKSHOPS


Abiotic Stress

W1 ESTs, MICROARRAYS AND MUTANTS IN ABIOTIC STRESS RESPONSES
HANS J. BOHNERT et. al.
W2 MOLECULAR GENETICS OF DROUGHT STRESS RESPONSE IN MARITIME PINE
CHRISTIAN DUBOS et. al.
W3 IDENTIFICATION OF QTLS FOR DROUGHT AND LOW NITROGEN RESPONSE IN TROPICAL MAIZE.
JEAN-MARCEL RIBAUT et. al.
Peter Langridge University of Adelaide (peter.langridge@adelaide.ede.au) Genetic Control of Micronutrients Stresses in Wheat and Barley - Boron, Manganese, Zinc and Copper
Nelson Marmiroli, University of Parma (marmirol@ipruniv.cce.unipr.it) Drought Stress Gene Isolation and Characterisation in Cereals
Ray Wu, Cornell University (ray.wu@cornell.edu) Approaches to Produce Superior Dehydration-Stress Tolerant Transgenic Rice Plants

Animal Comparative

Alan Conley, University of California - Davis (ajconley@ucdavis.edu) Pigs, Peccaries and Proteomics
W4 MAPPING AND CHARACTERIZING GENES AND QTL CONTROLLING REPRODUCTION IN MICE
JIMMY L. SPEAROW et. al.
Brian Kirkpatric, University of Wisconsin, Madison (kirkpat@calshp.cals.wisc.edu) Mapping and Characterizing Genes and QTLs Controlling Reprodution in Livestock

Apomixis

Hans deJong,University of Wageningen (Hans.deJong@genetics.dpw.wag-ur.nl) Introduction - Apomixis in the World of Modern Genomics
W5 APOMIXIS IN PENNISETUM
PEGGY OZIAS-AKINS et. al.
W6 GENETIC DISSECTION OF DIPLOSPOROUS AUTONOMOUS APOMIXIS IN TARAXACUM
PETER VAN DIJK et. al.
W7 MOLECULAR APPROACHES FOR THE TRANSFER OF APOMIXIS TO MAIZE
ENRICO PEROTTI et. al.
W8 ELEMENTS OF APOMIXIS IN ALFALFA (MEDICAGO SATIVA L.): AN OVERVIEW
GIANNI BARCACCIA et. al.
W9 EMBRYOLOGICAL AND MOLECULAR STUDIES OF APOMIXIS IN POA PRATENSIS
HELMUT BýUMLEIN et. al.

Aquaculture

Chris Tuggle, Iowa State University (cktuggle@iastate.edu) Comparative Mapping in Mammals: Surprises, Conclusions and Future Directions
W10 STATUS OF GENOMIC RESOURCES IN TILAPIA (OREOCHROMIS SPP.)
THOMAS D KOCHER et. al.
Bo-Young Lee, University of New Hampshire (bylee@cisunix.unh.edu) A Second Generation Map of the Tilapia Genome
W11 Characterization of Tilapia cDNA Sequences
WOO-JAI LEE et. al.
K.C. Majumdar, Centre for Cellular & Molecular Biology, Hyderabad (kshitish@ccmb.ap.nic.in) Satellite DNA Identifies Hybrid Nature of the Taiwanese Red tilapia>
W12 GENOMIC APPROACHES TO UNDERSTANDING HETEROSIS AND IMPROVING YIELD OF FARMED PACIFIC OYSTERS
DENNIS HEDGECOCK et. al.
W13 TRANSMISSION OF RECESSIVE DELETERIOUS MUTATIONS IN HYBRID F3 AND F4 FAMILIES OF THE PACIFIC OYSTER Crassostrea gigas.
KATHERINE BUCKLIN et. al.
W14 DEVELOPMENT OF A GENETIC MAP IN THE PACIFIC OYSTER, Crassostrea gigas, USING 11 DAY OLD LARVAE.
SOPHIE HUBERT et. al.
W15 CRASSOSTREA VIRGINICA MICROSATELLITE MARKERS ûDEVELOPMENT, TESTING AND PRELIMINARY LINKAGE ANALYSIS
KIMBERLY S REECE et. al.
W16 AN UPDATED LINKAGE MAP OF RAINBOW TROUT (Oncorhynchus mykiss) USING DOUBLED HAPLOIDS
KRISTA M. NICHOLS et. al.
Caird Rexroad, USDA-ARS (crexroad@afrs.ars.usda.gov) Production of Rainbow Trout Genetic Markers from Enriched and Normalized Libraries
John Killefer, West Virginia University (jkillef@wvu.edu) Expressed Sequence Tags of Rainbow Trout (Oncorhynchus mykiss) Intestine, Kidney and Liver mRNA
Acacia Alcivar-Warren, Tufts University (acacia.warren@tufts.edu) Progress in Marker Development and Mapping in Litopenaeus vannamei Shrimp (ShrimpMap)
W19 IMMUNE GENE DISCOVERY IN TWO SPECIES OF PENAEOID SHRIMP
GREGORY W WARR et. al.
W217 USE OF mRNA DIFFERENTIAL DISPLAY TO IDENTIFY THE DIFFERENTIALLY EXPRESSED GENES
ARUN DHAR et. al.
W22 MAPPING QUANTITATIVE TRAIT LOCI FOR PRODUCTION TRAITS OF THE KURUMA PRAWN PENAEUS JAPONICUS USING AFLP MARKERS
YUTAO LI et. al.
W17 CATFISH GENOMICS: PAST ACCOMPLISHMENTS AND FUTURE CHALLENGES
ZHANJIANG (JOHN) LIU et. al.
W18 USDA/ARS CATFISH GENOMICS RESEARCH
GEOFFREY C. WALDBIESER et. al.
W20 APPLICATIONS OF MOLECULAR MARKERS IN A COMMERCIAL WHITE STURGEON ACIPENSER TRANSMONTANUS BREEDING PROGRAM
JEFF RODZEN et. al.

Arabidopsis

W23 Detailed sequence analysis of Arabidopsis thaliana genome
KLAUS MAYER et. al.
John Quackenbush, TIGR (johnq@tigr.org) The TIGR Gene Indices: Reconstruction and Annotation of Transcribed Sequences
Sakis Theologis, USDA/ARS/PGEC (theo@nature.berkeley.edu) Mapping the Transcriptional Units of the Arabidopsis Genome
Stefan Turk, Keygene N.V. (stefan.turk@keygene.com) A Comprehensive Database of the Arabidopsis Transcriptome
W24 Developing the infrastructure and tools for facile access, analysis, and display of Arabidopsis data via the Web.
SEUNG Y RHEE et. al.
W25 FUNCTIONAL GENOMICS OF NBS-LRR ENCODING GENES IN ARABIDOPSIS
RICHARD MICHELMORE et. al.
W26 THE DEVELOPMENT OF A PUBLIC ARABIDOPSIS GENE TRAP LINE
JONATHAN H CLARKE et. al.

Array Technology

W27 cDNA microarray system for the analysis of rice gene expression II: Microarray with 9000 non-redundant EST clones as probe
Junshi Yazaki et. al.

Barley

W28 GENETICALLY AND PHYSICALLY ANCHORED EST RESOURCES FOR BARLEY GENOMICS
TIMOTHY J CLOSE et. al.
W29 THE GENE-RICH Mla-REGION CONTAINS DIFFERENTIALLY EXPRESSED, DEFENSE GENE FAMILIES INTERSPERSED WITH NESTED RETROTRANSPOSONS
ROGER WISE et. al.
Wayne Powell, SCRI (wpowel@scri.sari.ac.uk) TBA
W30 ESTS AS A RESOURCE FOR BARLEY GENOMICS
W. Michalek et. al.
W31 APPROACHES TO ISOLATING FLOWERING TIME GENES IN BARLEY
DAVID A. LAURIE et. al.
W32 TYPING BARLEY MLO ALLELES BY SINGLE NUCLEOTIDE POLYMORPHISM ANALYSIS USING MALDI-TOF MASS SPECTROMETRY
MAXIME PARIS et. al.
W219 TRANSPOSABLE ELEMENTS AS EFFICIENT VEHICLES FOR TAGGING AND GENE DELIVERY IN BARLEY
Thomas Koprek et. al.

BioDiscovery

W33 Platform-Independent Bioinformatics System for High Throughput
Soheil Shams et. al.

Bioinformatics/Computers

W34 TOOLS FOR COMPARATIVE GENOME ANALYSIS
Yudong Cai et. al.
W35 OPTIMAL ALGORITHM SELECTION FOR BIOINFORMATICS
MARTIN GOLLERY et. al.
W36 AN AUTOMATED METHOD FOR CONSTRUCTING COMPARATIVE MAPS
DEBRA GOLDBERG et. al.
W37 GENE EXPRESSION DATA MANAGEMENT USING GeneX
GREG D COLELLO et. al.
W38 genomeSCOUTÖ, THE PLATFORM FOR COMPUTATIONAL COMPARATIVE GENOMICS
G’nther Kurapkat et. al.

Brassicas

W39 A STUDY OF GENETIC DIVERSITY AND GENETIC MAPPING OF BRASSICA NAPUS USING EXPRESSED SEQUENCE TAGS (EST) OF ARABIDOPSIS AND MICROSATELLITE MARKERS OF B. NAPUS
STEPHANIE POLLOCK et. al.
W40 APPLICATION OF MULTIPLEX SEQUENCE-TAGGED SITE MICROSATELLITES (STSMS) FOR DISTINCTNESS, UNIFORMITY AND STABILITY TESTING IN BRASSICA NAPUS
LIVIA TOMMASINI et. al.
W41 MOLECULAR CYTOGENETIC ANALYSIS OF BRASSICA GENOMES
ROD J. SNOWDON et. al.
W42 INTEGRATING THE GENETIC AND PHYSICAL CHROMOSOME MAPS OF BRASSICA OLERACEA
SUSAN J. ARMSTRONG et. al.
W43 Application of BAC library for Chinese cabbage genome research
YONG PYO LIM et. al.
W44 TOWARDS MAPPING GENES FOR DOWNY MILDEW RESISTANCE IN BRASSICA OLERACEA
MARK W. FARNHAM et. al.

Cattle/Sheep

W45 Genomic imprinting and its relevance to livestock
ANDREW A WYLIE et. al.
W46 IDENTIFICATION OF POSITIONAL CANDIDATES FOR THE CARWELL LOCUS FOR RIB-EYE MUSCLING IN SHEEP.
ROBERT J MCLAREN et. al.
W47 A 3800 GENE MICROARRAY FOR CATTLE FUNCTIONAL GENOMICS
MARK R BAND et. al.
W48 DISCOVERY AND MAPPING OF SNPS IN BOVINE GENES: HIGH THROUGHPUT EST SEQUENCING, PRIMER DEVELOPMENT, AND GENOTYPING
TIMOTHY P.L. SMITH et. al.

Coat Color

W49 GENETIC AND MOLECULAR BASIS OF MAMMALIAN PIGMENTATION PATTERNS
GREG BARSH et. al.
W50 Coat colour genetics in cattle
HELGE KLUNGLAND et. al.
W51 IDENTIFICATION OF THE GENE RESPONSIBLE FOR THE APPALOOSA SPOTTING PATTERNS.
REBECCA R TERRY et. al.
W52 PLUMAGE COLOR IN CHICKENS
MICHˆLE TIXIER-BOICHARD et. al.

Compositae

W53 COMPOSITDB AND COMPARATIVE GENOMICS OF DOMESTICATION TRAITS IN LETTUCE AND SUNFLOWER
RICHARD W. MICHELMORE et. al.
W54 THE DEVELOPMENT OF DNA MARKERS FOR HIGH-THROUGHPUT GENOTYPING IN CULTIVATED SUNFLOWER: LENGTH POLYMORPHISMS AND GENETIC MAPPING OF SIMPLE SEQUENCE REPEATS AMONG RECOMBINANT INBRED LINES
S. TANG et. al.
W55 THE DOWNY MILDEW RESISTANCE REGION OF SUNFLOWER CONTAINS A LARGE CLUSTER OF TIR-NBS-LRR GENES
MARY B. SLABAUGH et. al.
W56 EVOLUTION OF THE MAJOR CLUSTER OF RESISTANCE GENES IN LETTUCE
HANHUI KUANG et. al.
W57 QTL MAPPING FOR GROWING DEGREE DAYS TO FLOWERING AND PHOTOPERIOD RESPONSE IN SUNFLOWER (Helianthus annuus L.)
ALBERTO J. LEON et. al.
W58 THE ROLE OF CHROMOSOMAL REARRANGEMENTS IN SPECIATION: INSIGHTS FROM GENETIC MAP-BASED STUDIES OF SUNFLOWER HYBRIDS
LOREN RIESEBERG et. al.

Cotton

W59 PROGRESS IN COTTON GENETICS AND GENOMICS
ANDREW PATERSON et. al.
W60 COMPARATIVE PHYSICAL MAPPING IN COTTON (GOSSYPIUM)
RICHARD D. NOYES et. al.
W61 MAPPING THE GOSSYPIUM G GENOME AND THE FATE OF G. AUSTRALE CHROMOSOMES IN G. HIRSUTUM X G. AUSTRALE ALIEN CHROMOSOME ADDITION LINES II: THE FIDELITY AND FREQUENCY OF G. AUSTRALE CHROMOSOME TRANSMISSION IN BACKCROSS PROGENY
CURT L BRUBAKER et. al.
W62 AN OVERVIEW OF USDA-ARS COTTON GENOME RESEARCH AT COLLEGE STATION, TEXAS
JOHN YU et. al.
Thea Wilkins (tawilkins@ucdavis.edu) TBA
W63 INTEGRATED GENETIC AND PHYSICAL MAPPING IN COTTON
ROY G. CANTRELL et. al.
W64 GENETIC DIVERSITY IN LINKAGE MAPS DEVELOPED FROM FOUR F2.3 COTTON POPULATIONS
MAURICIO ULLOA et. al.

Databases, Gene Systematics, and Nomenclature

W65 Whole proteome analysis: The role of InterPro and CluSTr
ROLF APWEILER et. al.
W66 INTEGRATION OF ARABIDOPSIS MICROARRAY EXPRESSION AND GENE SEQUENCE DATA
ROB M EWING et. al.
W67 ERGOÖ: AN INTERACTIVE BIOINFORMATICS DATABASE
IAIN J ANDERSON et. al.
W68 UK CropNet: Integrating and analysing data from distributed sources
Guy Davenport et. al.
W69 MAIZEDB: COPING WITH THE DELUGE, NEW ACCESSES AND LINKAGES.
MARY L POLACCO et. al.
Louise M. McKenzie, Jackson Laboratory (lmm@informatics.jax.org) Standardized Mouse Nomenclature and its Role in the Integration of Genetic and Genomic Resources
W70 NOMENCLATURE FOR THE GENOME
HESTER M WAIN et. al.

Forage & Turfgrass

W71 GENE DISCOVERY AND FUNCTIONAL GENOMICS IN FORAGE, TURF AND EXOTIC GRASSES
GERMAN SPANGENBERG et. al.
Kate Vandenbosch, USA (kate@mail.bio.tamu.edu) Gene Expression in the Model Legume, Medicago truncatula, during Microbial Interactions
W72 EST DISCOVERY AND MICRARRAY-BASED GENE EXPRESSION PROFILING IN WHITE CLOVER (TRIFOLIUM REPENS)
TIM SAWBRIDGE et. al.
W73 GENETIC TRANSFORMATION OF COOL SEASON FORAGE GRASSES
ZENGYU WANG et. al.
W74 TRANSGENIOC APPROACHES TO HERBAGE QUALITY IMPROVEMENT IN TALL FESCUE AND ITALIAN RYEGRASS
PHILLIP MORRIS et. al.
W75 DISSECTION OF HOMOLOGY-DEPENDENT VIRUS RESISTANCE IN FERTILE TRANSGENIC PERENNIAL RYEGRASS (LOLIUM PERENNE L.) PLANTS
FREDY ALTPETER et. al.
W76 MOLECULAR MAPPING, QTLS AND ECOPHYSIOLOGY FOR BREEDING IN THE FESTUCA/LOLIUM COMPLEX
MARC GHESQUIRE et. al.
W77 INTEGRATING GENOMICS AND BREEDING TO IMPROVE YIELD AND WINTER HARDINESS IN ALFALFA
E. CHARLES BRUMMER et. al.
W78 MAPPING AND IDENTIFYING GENES THAT DISTINGUISH RYEGRASS PHENOTYPES
SCOTT E WARNKE et. al.
W79 ALIGNMENT OF PENNISETUM CILIARE AND SORGHUM BICOLOR CHROMOSOMES BASED ON EST-ENRICHED GENETIC MAPS
Gloria B. Burow et. al.
W80 ISOLATION AND CHARACTERIZATION OF GENES FROM THE PISTILS OF APOMICTIC BUFFELGRASS.
Mark A. Hussey et. al.
W81 GENETIC MAP CONSTRUCTION IN REFERENCE AND TRAIT-SPECIFIC FAMILIES OF PERENNIAL RYEGRASS AND WHITE CLOVER
JOHN W. FORSTER et. al.

Forest Tree Genome Mapping

W82 GENETIC ANALYSIS OF GROWTH AND WOOD QUALITY TRAITS IN INTERSPECIFIC BACKCROSS FAMILIES OF EUCALYPTUS GRANDIS AND EUCALYPTUS GLOBULUS
ALEXANDER A. MYBURG et. al.
W83 A BACKROSS-BASED APPROACH FOR MARKER ANALYSIS OF THREE-GENERATION OUTBRED PEDIGREES
M. HUMBERTO REYES-VALDES et. al.
W84 POLYMIX BREEDING COMBINED WITH PARENTAL ANALYSIS (PMX/WPA) OF PROGENY: AN ALTERNATIVE TO FULL-SIB BREEDING AND TESTING
Clem Lambeth et. al.
W85 CYTOPLASMIC MALE STERILITY RESULTING FROM INTERSPECIFIC CROSSES IN CHESTNUT (CASTANEA SPP.)
PAUL H. SISCO et. al.
W86 MOLECULAR DIFFERENTIATION BETWEEN TWO EUROPEAN OAK SPECIES: QUERCUS ROBUR AND QUERCUS PETRAEA
CATHERINE BOD‰NˆS et. al.
W87 FINGERPRINTING AND MAPPING EUCALYPTUS WITH LARGE BATTERIES
Rosana P.V. Brondani et. al.
W88 MICROSATELLITE DNA MARKERS IN WHITE SPRUCE (PICEA GLAUCA), AND
OM P. RAJORA et. al.
W89 POPLAR MICROSATELLITE DNA MARKERS
OM P. RAJORA et. al.
W90 MOLECULAR PORTRAITS OF NITROGEN RESPONSES IN POPLARS
JANICE E.K. COOKE et. al.
W91 MOLECULAR CHARACTERIZATION OF A MUTANT ALLELE OF CAD IN LOBLOLLY PINE.
JOHN J. MACKAY et. al.
W92 COMPARATIVE QTL MAPPING IN PROGENY OF INTER-VARIETAL HYBRIDS OF DOUGLAS-FIR
KONSTANTIN V. KRUTOVSKII et. al.
W93 GENOMICS OF WOOD FORMATION IN BLACK LOCUST
KYUNG-HWAN HAN et. al.
W94 INTERSPECIFIC TESTING OF GENDER-ASSOCIATED SCAR MARKERS IN SALIX
LEE E GUNTER et. al.

Fruit/Nut Tree

W95 IDENTIFICATION AND CHARACTERIZATION OF A RECEPTOR-LIKE GENE CLUSTER FROM THE VF SCAB RESISTANCE LOCUS IN APPLE
BORIS A VINATZER et. al.
W96 GENE IDENTIFICATION AND MOLECULAR PHYLOGENETICS IN STRAWBERRY
Thomas M Davis et. al.
W97 GENETIC AND PHYSICAL MAPPING OF THE EVERGREEN GENE
YING WANG et. al.
W98 APPLICATION OF FISH AND GISH TECHNIQUES TO THE CHROMOSOME ANALYSIS OF DIOSPYROS SPP.
Ryutaro Tao et. al.

Functional Genomics

W99 Harvesting genetic variation: Combining genome wide integrated genetic and physical maps with expression profiling
Javed Iqbal et. al.
W100 GENE EXPRESSION PROFILING OF SA-DEPENDENT RESISTANCE PATHWAYS DURING POWDERY MILDEW INFECTION USING ARABIDOPSIS MICROARRAYS
KATRINA M. RAMONELL et. al.
W101 DEVELOPMENTAL GENE DISCOVERY IN LEGUMES
PETER M GRESSHOFF et. al.
W102 PLANT STRESS RESPONSES: A SIGNALLING GENE NETWORK
RAMAMURTHY MAHALINGAM et. al.
W103 Clone Resources and Data Integration Concept for Expression Profiling.
RALF LOEBBERT et. al.

ICSB

Andre L. Vettore, University of Campinas (avettore@unicamp.br) Discovering the Sugarcane Genes
Paulo C. G. Ferreira, Federal University of Rio de Janeiro (paulof@bioqmed.ufrj.br) Identification of cDNAs from Sugarcane Encoding Components of the Cell Cycle Machinery
W104 BRAZILIAN SUGARCANE EST GENOME PROJECT - ESTS INVOLVED IN THE MECHANISMS OF PLANT DEFENSE AGAINST PATHOGENS
EIKO EURYA KURAMAE et. al.
W105 A GENOMIC APPROACH TO GRASS FLOWER DEVELOPMENT
MARCELO C DORNELAS et. al.
W106 CROSS SPECIES HYBRIDIZATION OF HIGH-DENSITY MEMBRANES CONTAINING SUGARCANE ESTS TO IDENTIFY ALUMINUM-INDUCED GENES FROM MAIZE.
Juliana M Felix et. al.
W107 THE IDENTIFICATION OF GENES PREFERENTIALLY EXPRESSED IN THE SUGARCANE CULM IS FACILITATED THROUGH THE USE OF cDNA SUBTRACTION
DEBORAH L. CARSON et. al.
W108 APPLYING MOLECULAR MARKERS TO SUGARCANE BREEDING
JORGE DA SILVA et. al.
W109 MAPPING IN SUGARCANE IN AUSTRALIA
C. LYNNE MCINTYRE et. al.
W110 SUCROSE SYNTHASE-1 cDNA SEQUENCE VARIATION IN DIFFERENT SACCHARUM SPECIES
SARAH E. LINGLE et. al.
W111 AN ANALYSIS OF GENOTYPIC DIVERSITY AND SPATIAL PHYLOGENETIC VARIATION IN SUGARCANE YELLOW LEAF VIRUS ISOLATES FROM NORTH, CENTRAL, AND SOUTH AMERICA
FRANCIS MOONAN et. al.
W112 A GENE ENCODING A PUTATIVE STRUCTURAL PROTEIN CONFERS TRANSGENIC RESISTANCE IN SUGARCANE TO FIJI DISEASE FIJIVIRUS
Richard B McQualter et. al.
W113 SUGARCANE MICROSATELLITES: THEIR USE AND CHARACTERISTICS
Giovanni M Cordeiro et. al.
W114 WALK TOWARDS A MAJOR RUST RESISTANCE GENE IN SUGARCANE CULTIVAR R570 (2n=ca 115)
ANGÉLIQUE D'HONT et. al.

IGGI

W116 RETROTRANSPOSONS AND GENOME ORGANIZATION IN BARLEY
Carlos M Vicient et. al.
W117 CONSTRUCTION AND UTILIZATION OF AN INTEGRATED GENETIC AND PHYSICAL MAP OF SORGHUM.
ROBERT R. KLEIN et. al.
W118 DNA SEQUENCE ANALYSIS OF CLOSELY RELATED GRASS GENOMES
JOACHIM MESSING et. al.
Wusirika Ramakrishna Purdue University (wusirika@purdue.edu) Comparative Sequence Analysis of Grass Genomes using Orthologous Regions from Barley, Maize, Pearl Millet, Sorghum, Rice and Wheat
W119 COMPARATIVE GENOME ANALYSIS WITHIN THE GRASSES USING ARCADE
Guy F Davenport et. al.
W120 COMPARATIVE MAPPING OF LOLIUM PERENNE WITH OTHER MEMBERS OF THE POACEAE
ELIZABETH S. JONES et. al.

ITMI

W121 Sequence comparison between rice and Triticeae colinear regions as a tool for gene discovery and gene structure annotation
JORGE DUBCOVSKY et. al.
Adam Lukaszewski, University of California - Riverside (ajoel@ucrac1.ucr.edu) High Resolution Mapping in the Absence of the Ph1 Locus in Wheat
Graham Moore, John Innes Centre (graham.moore@bbsrc.ac.uk) The Ph1 Locus Controls Centromere Behaviour During Meiosis, Floral and Root Development
Jan Dvorak, University of California - Davis Genetic Analysis of the Inhibition of Ph1 by the Aegilops speltoides Genom (jdvorak@ucdavis.edu)

Large-Insert DNA Libraries and Their Applications

W123 INTEGRATING GENETIC AND PHYSICAL MAPS FOR POSITIONAL CLONING IN CORN: ESTs, SNPs AND BACs
Marianna L Faller et. al.
W124 NEW PROCEDURES FOR CONSTRUCTION OF LARGE INSERT BAC LIBRARIES
KAZUTOYO OSOEGAWA et. al.
W125 BUILDING AND USING A BAC-BASED PHYSICAL MAP OF THE DROSOPHILA GENOME
ROGER A. HOSKINS et. al.
W126 DEVELOPMENT AND APPLICATIONS OF GENOME-WIDE BAC/BIBAC-BASED PHYSICAL MAPS FOR ACCELERATED RESEARCH OF AGRICULTURAL GENOMES
HONG-BIN ZHANG et. al.
W127 APPLICATION OF BAC FISH FOR CHINESE CABBAGE GENOME ANALYSIS
JAE-WOOK BANG et. al.
W128 BAC-BASED SEQUENCING OF THE ARABIDOPSIS THALIANA GENOME
CHRIS D. TOWN et. al.
John Yu, USDA-ARS at College Station, Texas (zyu@algodon.tamu.edu) Integrative Physical Mapping in Cotton (Gossypium hirsutum L.) with Large-insert BAC and BIBAC Libraries
Clarice J. Coyne, Washington State University (coynec@wsu.edu) Large-insert Library for Positional Cloning of Disease Resistance Genes in Pea
W129 APPLICATION OF AFLP-DERIVED SCAR MARKERS FOR CONSTRUCTING A BAC CONTIG SPANNING THE APPLE SCAB RESISTANCE GENE Vf
Mingliang Xu et. al.

Legumes

W131 Legume Genomics: A Comparison
GARY STACEY et. al.
W132 UPDATE ON THE PUBLIC SOYBEAN EST PROJECT
RANDY C. SHOEMAKER et. al.
W133 SOYBEAN FUNCTIONAL GENOMICS
LILA O. VODKIN et. al.
W134 SOYBEAN GENOMIC SURVEY: BAC-END SEQUENCES NEAR RFLP AND SSR MARKERS
LAURA FREDRICK MAREK et. al.
W135 DEVELOPMENT OF A BAC/BIBAC-BASED PHYICAL MAP OF THE SOYBEAN GENOME FOR ACCELERATED GENOMICS RESEARCH
Chengcang Wu et. al.
W136 GLOBAL ESTIMATES OF MICROSYNTENY AMONG SOYBEAN, MEDICAGO TRUNCATULA, AND ARABIDOPSIS THALIANA
NEVIN D. YOUNG et. al.
W137 CLONING RHG1 IN SOYBEAN
KHALID MEKSEM et. al.

LICOR - Automated Genetic Analysis

W138 A PHYSICAL AFLP MAP OF ARABIDOPSIS THALIANA
JANNY L. PETERS et. al.
W139 INFRARED FLUORESCENT LABELING TECHNOLOGY FOR THE ANALYSIS OF MEMBRANE ARRAYS AND SOUTHERN, NORTHERN, AND WESTERN BLOTS
Margaret Esser et. al.
W140 GENETIC MAPPING IN OUTBRED FOREST TREE PEDIGREES USING INFRARED DYE-LABELED AFLP MARKERS AND AUTOMATED DNA SEQUENCERS
ALEXANDER A. MYBURG et. al.
W141 EXPRESSION PROFILING OF CELL CYCLE MODULATED GENES IN TOBACCO BY2 USING cDNA-AFLP
PETER BREYNE et. al.

Life Technologies Pres.

Maize

W143 TRANSGENIC MAIZE PRODUCTION AT THE ISU PLANT TRANSFORMATION FACILITY
BRONWYN R. FRAME et. al.
W144 MAIZE TRANSFORMATION - AN INDUSTRY PERSPECTIVE
CHARLES L. ARMSTRONG et. al.
W145 <|>Agrobacterium-mediated transformation of maize: optimization of parameters for utilization of nonsuperbinary vectors.
HEIDI F KAEPPLER et. al.
W146 WHAT CAN ARABIDOPSIS TRANSFORMATION TEACH US ABOUT MAIZE TRANSFORMATION?
STANTON B. GELVIN et. al.
W147 TRANSFORMATION OF RECALCITRANT CROP SPECIES: A CASE STUDY ON AGROBACTERIUM-MEDIATED TRANSFORMATION OF SOYBEAN AND ITS IMPLICATION TO MAIZE TRANSFORMATION
ZHANYUAN ZHANG et. al.

Molecular Marker

W148 GENETIC BASIS OF INBREEDING DEPRESSION AND HETERIOSIS IN RICE (Oryza sativa L.)
ZHI-KANG LI et. al.
W149 SNP MARKERS IN MAIZE: DISCOVERY AND APPLICATIONS
ANTONI RAFALSKI et. al.
W150 COMPLEX TRAITS: HOW FAR CAN MOLECULAR TOOLS TAKE US IN APPLIED BREEDING?
MARK COOPER et. al.
W151 IMPROVEMENT OF HYBRID RICE BY MOLECULAR BREEDING
QIFA ZHANG et. al.
W152 MARKER-ASSISTED SELECTION IN MAIZE: STRATEGIES, EXAMPLES AND COSTS
JEAN-MARCEL RIBAUT et. al.
W153 MOLECULAR CHARACTERIZATION OF INTROGRESSION AND ALIEN GENE TRANSFER IN RICE
D. S. Brar et. al.

Nutraceuticals

W155 The Combination of Nutrition and Metabolicpathway Definition will Drive Functional Food Development
JOHN W. FINLEY et. al.

Ornamentals

W156 BIOTECH APPROACH FOR GERMPLASM CONSERVATION OF A FEW MEDICINAL PLANTS
ILA CHAUDHURI et. al.
W157 REGULATION OF FLORAL SCENT PRODUCTION IN SNAPDRAGON FLOWERS
NATALIA DUDAREVA et. al.

Pest & Pathogen Resistance

W158 QUANTITATIVE TRAIT LOCI FOR CORN EARWORM RESISTANCE
MICHAEL D. MCMULLEN et. al.
W159 USE OF GENE EXPRESSION PROFILING FOR ORDERING COMPONENTS OF THE SALICYLIC ACID DEPENDENT SIGNAL TRANSDUCTION NETWORK
JANE GLAZEBROOK et. al.
W160 RESISTANCE OF A SILENCED TRANSGENIC PLUM CLONE CONTAINING THE PLUM POX POTYVIRUS COAT PROTEIN GENE
ANN M CALLAHAN et. al.
W161 DISSECTING PLANT-INSECT INTERACTIONS WITH EXPRESSION PROFILING
HEIKO VOGEL et. al.
W162 DISSECTING DISEASE DEFENSE RESPONSE PATHWAYS IN RICE
JAN E. LEACH et. al.
W163 EXPRESSION PROFILING OF GENES THAT ARE INDUCED OR SUPPRESSED DURING AN INCOMPATIBLE PLANT-PATHOGEN INTERACTION IN TOMATO
KIRANKUMAR S MYSORE et. al.

Plant Cytogenetics

W164 ANALYZING PLANT GENOME STRUCTURE AND EVOLUTION BY IN SITU AND MICRO-ARRAY HYBRIDIZATION
TRUDE SCHWARZACHER et. al.
W165 APPLICATIONS OF BACTERIAL ARTIFICIAL CHROMOSOMES IN PLANT CYTOGENETIC RESEARCH
JIMING JIANG et. al.
W166 INTEGRATION OF THE GENETIC AND PHYSICAL MAPS OF BARLEY AND WHEAT BASED ON FISH WITH cDNAS AND BACS
N. L. V. LAPITAN et. al.
W167 MAPPING THE MAIZE GENOME VIA ADDITION LINES AND RADIATION HYBRIDS
RONALD L. PHILLIPS et. al.
W168 HISTONE ACETYLATION OF EUCHROMATIN AND HETEROCHROMATIN ALTERS ALONG THE CELL CYCLE AND IS LINKED WITH REPLICATION RATHER THAN WITH TRANSCRIPTION
INGO SCHUBERT et. al.
W169 DYNAMICAS OF HISTONE H3 PHOSPHORYLATION DURING MITOSIS AND MEIOSIS OF PLANTS
ANDREAS HOUBEN et. al.
Not included on cyto
W170 ANTHER CULTURE OF MONOSOMIC ALIEN ADDITION LINE FOR PRODUCING WHEAT ALIEN TRANSLOCATION LINES RESISTANT TO DISEASES AND APHIDS
ZHAO MAO-LIN et. al.
W171 CREATION OF A WHEAT-THINOPYRUM INTERMEDIUM HOMOGENOUS TRANSLOCATION LINE BY ANTHER CULTURE OF MONOSOMIC ADDITION LINES
RUI-FEN LI et. al.

Polyploidy

J. Wendel, Iowa State University (jfw@iastate.edu) Jeans, Genes, and Genomes: Insights into Polyploidy from the Cotton Genus
W172 GENOMIC ARCHAEOLOGY: THE ORIGIN AND FATE OF PALEODUPLICATIONS IN THE ANGIOSPERMS
TODD J. VISION et. al.
W173 THE MECHANISMS OF ORIGIN, GENOME EVOLUTION AND SPECIATION BY ALLOPOLYPLOIDY
Bikram S. Gill et. al.
W174 TOWARDS UNDERSTANDING OF PARENTAL GENE REGULATION IN PLANT POLYPLOIDS
Hyeon-Se Lee et. al.
W175 CHROMOSOME ASSORTMENT IN A SUGARCANE CULTIVAR (2N = CA 115)
JEAN CHRISTOPHE GLASZMANN et. al.

Poultry

W176 DEVELOPMENT OF A BAC-BASED PHYSICAL MAP OF THE CHICKEN GENOME FOR HIGH-THROUGHPUT GENE MAPPING AND CLONING
Mi-Kyung Lee et. al.
W177 DEVELOPING NEW GENETIC VARIATION IN POULTRY BY GENE TRANSFER AND CHROMOSOME ALTERATION
JAMES PETITTE et. al.
W178 IDENTIFICATION, LOCALIZATION, ISOLATION AND CHARACTERIZATION OF POULTRY GENES OF ECONOMIC IMPORTANCE
MARLENE G. EMARA et. al.
W179 PROGRESS IN DESCRIPTIVE AND COMPARATIVE GENOMICS OF POULTRY RELATED TO NRSP-8 OBJECTIVES
RONALD OKIMOTO et. al.
W180 INTEGRATION OF MOLECULAR AND QUANTITATIVE METHODOLOGIES FOR ENHANCED EFFICIENCY OF GENETIC SELECTION FOR BIOLOGICAL IMPROVEMENT IN POULTRY
SUSAN J. LAMONT et. al.
W181 POULTRY WORKSHOP: ADVANCED TECHNOLOGIES FOR THE GENETIC IMPROVEMENT OF POULTRY (NC-168 REGIONAL RESEARCH MEETING)
WILLAM M MUIR et. al.
W182 PHYSICAL MAPPING OF THE CHICKEN GENOME
RICHARD P.M.A. CROOIJMANS et. al.

Qiagen - Novel tools to accelerate genotyping and gene expression analysis

W183 FAST, RELIABLE NUCLEIC ACID ISOLATION ACCELERATES MOLECULAR STUDIES IN PLANTS
SIMONE P GAUCH et. al.
W184 Critical Factors for Successful PCR and RT-PCR
KENNETH J. DWYER et. al.
W185 The Masscode[tm] system for high throughput SNP genotyping:
MARK KOKORIS et. al.
W186 PLANAR WAVEGUIDE MICROARRAYS FOR INCREASED SENSITIVITY IN GENE EXPRESSION MONITORING
Andreas Abel et. al.

Rice

Takuji Sasaki, (tsasaki@abr.affrc.go.jp) The IRGSP and the Japanese Rice Genome Project
Robin Buell, TIGR (rbuell@tigr.org) The Institute for Genome Research Rice Genome Project
Rod Wing, Clemson University (rwing@clemson.edu) The CCW Research Rice Genome Project
W187 SEQENCING OF CHROMOSOME 4 OF THE RICE ORYZA
BIN HAN et. al.
Jingdong Liu, (jingdong.liu@stl.monsanto.com The Monsanto Working Draft
Lincoln Stein, Cold Spring Harbor Labs (lstein@cshl.org) Gramene: A Resource for Comparative Mapping Among Grains
W188 RICE GENE TAGGING BY T-DNA
GYNHEUNG AN et. al.
Ralph Dean, North Carolina State University (ralph_dean@ncsu.edu) Current Status of the Rice Blast Genome Project

Sequenom Presentation

W189 A Cost-effective Strategy for Marker-Assisted Breeding and Candidate Gene Association Studies
CHARLIE RODI et. al.

Statistical Methods

W190 ESTIMATING GENETIC RELATEDNESS AMONG INBREDS WITH MOLECULAR MARKERS
REX BERNARDO et. al.
W191 AN ALGORITHM TO OBTAIN AN IRREDUCIBLE MARKOV CHAIN TO SAMPLE
ROHAN L. FERNANDO et. al.
W192 QTL MAPPING IN COMPLEX PEDIGREES
INA HOESCHELE et. al.
Johan van Arendonk, Wageningen University (johan.vanarendonk@alg.vf.wau.nl) Exploiting Complex Pedigrees for Mapping QTL in Farm Animals
Dr. A. B. Korol, Y. I. Ronin and E. Nevo, University of Haifa (korol@esti.haifa.ac.il) Enhanced Efficiency of QTL Mapping Analysis Based on Multivariate Complexes of Quantitative Traits
W193 MIXED MODEL ANALYSIS OF QUANTITATIVE TRAIT LOCI
SHIZHONG XU et. al.

Solanaceae

W194 Development of Functional Genomics Tools for Potato Research
C ROBIN BUELL et. al.
W195 A COMPARATIVE GENOME MAP OF EGGPLANT
SAMI DOGANLAR et. al.
Colwyn Thomas and Jonathan Jones Sainsbury Lab, John Innes Center, (colwyn.thomas@bbsrc.ac.uk) Natural and Unnatural Variation in R genes; Clues to Function
W196 TWO ADDITIONAL CLUSTERS WITH FUNCTIONAL CF-GENES ON THE SHORT ARM OF CHROMOSOME 1 OF TOMATO.
GUUSJE BONNEMA et. al.
W197 MARKER-ASSISTED INTROGRESSION OF DISEASE RESISTANCE QTLS IN TOMATO: REALITY VERSUS EXPECTATIONS
DINA A. ST.CLAIR et. al.
W198 ASSOCIATION MAPPING IN POTATO OF A QTL FOR LATE BLIGHT RESISTANCE
CHRISTIANE GEBHARDT et. al.
W199 Cloning Hot Prospects - Searching for Capsaicinoid Pathway Genes
MARY A O'CONNELL et. al.
W200 DEVELOPMENT OF A SOLANACEAE GENOME DATABASE: SGN
RUTGER S. VAN DER HOEVEN et. al.

Sugar Beet

W201 HIGH-RESOLUTION MAPPING OF A GENE CONFERRING RESISTANCE TO RHIZOMANIA IN SUGAR BEET (BETA VULGARIS L.)
SANDRA HUNGER et. al.
W202 REGIONS OF SYNTENY BETWEEN BETA VULGARIS AND ARABIDOPSIS THALIANA REVEAL DUPLICATIONS IN BOTH GENOMES
ISABELLE DOMINGUEZ et. al.
W203 THE MOLECULAR CYTOGENETIC OF BETA CENTROMERES
THOMAS SCHMIDT et. al.
W204 CONSTRUCTION AND CHARACTERIZATION OF A SUGAR BEET BAC LIBRARY FOR THE ISOLATION OF A PLANT CENTROMERE
FRANK GINDULLIS et. al.
Britta Schultz, KWS (b.schulz@kws.de) GABI-BEET: A Project to Provide Tools for Genome Analysis in Sugar Beet
W205 GENE EXPRESSION ANALYSES TO IDENTIFY AND TARGET GENES FOR AGRONOMIC TRAITS, A CASE OF IMPROVING EMERGENCE IN SUGAR BEET
J. MITCHELL MCGRATH et. al.

Swine

W206 A MOLECULAR GENOME SCAN ANALYSIS TO IDENTIFY GENES
MAX F. ROTHSCHILD et. al.
W207 MONITORING GENE EXPRESSION IN SWINE SKELETAL MUSCLE
Katie Seo et. al.
W208 UPDATE ON DEVELOPMENT OF RESOURCES FOR FUNCTIONAL GENOMICS IN THE PIG
CHRISTOPHER K TUGGLE et. al.
W209 Pig Genetic Comparative Mapping with EST-associated SNPs
SCOTT C. FAHRENKRUG et. al.

Transcriptional Profiling

W210 TRANSCRIPTIONAL PROFILING AND GENE FUNCTION DISCOVERY WITH PLANT VIRAL VECTORS
YIJUN RUAN et. al.
W27 cDNA microarray system for the analysis of rice gene expression II: Microarray with 9000 non-redundant EST clones as probe
Junshi Yazaki et. al.
A. Jones, Using Gene Expression Databases to extract maximum value from genomic information
W33 Platform-Independent Bioinformatics System for High Throughput
Soheil Shams et. al.
T.V. Venkatesh, Design and Analysis of a Transcriptional Profiling Experiment to Study Changes in Gene Expression Pattern During Soy Embryo/Seed Development
O. R. Crasta, Curagen Corporation, Open-Architecture Transcriptome Profiling For Discovery Of Genes And Tools For Crop Improvement And Protection

WWW

W218 Gene Expression Markup Language (GEML): A Common Data Format for Gene Expression Data and Annotation Interchange
ALAN JONES
W211 INTEGRATION, ANNOTATION, AND VISUALIZATION OF DIVERSE BIOINFORMATICS DATA USING XML DATA FORMATS AND XML-BASED SOFTWARE
JEFFERY R. SPITZNER
M. Gribskov, San Diego Supercomputer Center, WWW Access to Supercomputing Resources for Genome Research.

Controlled Vocabulary/Ontology

W212 The Gene Ontology project: building shared, organized controlled vocabularies
MIDORI A. HARRIS et. al.
W213 Development of controlled vocabularies for The Arabidopsis Information Resource (TAIR) database
LEONORE REISER et. al.
W216 THE GRAMENE DATABASE FOR GRASS GENOMIC RESOURCES
ANGELA M BALDO et. al.
W214 'EARS' AND 'TASSELS' - A PROTOTYPE OF A STRUCTURED CONTROLLED VOCABULARY FOR MAIZE
LESZEK VINCENT et. al.
W215 Progress towards Controlled Vocabularies for Rice at IRRI
RICHARD BRUSKIEWICH et. al.