Plant Genome IV Conference
Town & Country Conference Center, San Diego, CA, January, 1995.
W40
A Common Nomenclature for Sequenced Plant Genes: Update 1996
ELLEN M. REARDON(1), CARL A. PRICE(1), STEPHEN M.
BECKSTROM-STERNBERG(2), WOLFGANG LOEFFELHARDT(3) and DAVID LONSDALE(4)
1. Waksman Institute, Rutgers University, Piscataway, NJ 08855-0759,
USA
2. Genome Informatics Group, National Agricultural Library, USDA,
Beltsville, MD 20705, USA
3. Institut fur Biochemie und Molekulare Zellbiologie und
Ludwig-Boltzmann-Forschungsstelle fur Biochemie, Universitaet Wien,
A-1030, Vienna, Austria
4. John Innes Center, Cambridge Laboratory, Colney Lane, Norwich,
Norfolk NR4 7UJ, UK
The Commission on Plant Gene Nomenclature was organized in 1991 by the
International Society for Plant Molecular Biology. The CPGN was
challenged with the task of providing common nomenclature across the
plant kingdom for genes encoding essentially the same product. Working
groups of scientists with expertise in specific genes:
light-harvesting proteins, tubulins, chitinases, amino acid pathways,
for example, were recruited to identify designations most descriptive
and appropriate with which to label the sets of genes in their
category. More than fifty working groups have assembled mnemonics for
more than four hundred plant-wide families of genes; these gene names
are contained in Mendel, a CPGN database accessible at
http://probe.nalusda.gov:8300/cgi-bin/browse/mendel. The success of
the CPGN endeavor has led to the opening this year of a second office,
this in Norwich, UK. Previous workshops have addressed the rationale
employed by working groups in assigning gene names, the role of
editorial boards in promoting the use of the new gene designations,
and the retrieval of nomenclature from the World Wide Web. This
workshop will address the topics of:
- linkages to other databases of nucleotide and protein sequences,
metabolic maps, phytochemistry, genetics and genetic loci facilitated
by the "synonym" field of Mendel.
- assignment of gene designations in anticipation of the explosion of
sequences for genes encoding enzymes in pathways to phytochemicals and
secondary metabolites.
- inclusion of designations for algal genes both similar to and
differing from those of higher plants.
- the mission and staffing of the CPGN's European office.
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