PAG-II Plant Genome II Conference

Town & Country Conference Center, San Diego, CA, January, 1994.


PG-II: LEVELS OF DNA SEQUENCE POLYMORPHISM AMONG WHEAT BREEDING VARIETIES

LEVELS OF DNA SEQUENCE POLYMORPHISM AMONG WHEAT BREEDING VARIETIES

Glenn Bryan, Katrien Devos, Pauline Stephenson, Angela Collins, Jim Smith and Mike Gale, Cambridge Laboratory, John Innes Centre, Norwich, NR4 7UJ, UK


The genome of hexaploid bread wheat (Triticum aestivum) exhibits very low levels of restriction fragment length polymorphism (RFLP). This may be due to the relatively recent origin of hexaploid wheat. A study has been undertaken to assess the level of DNA sequence polymorphism present among wheat varieties. Sequences corresponding to PCR-amplified genomic segments of mapped RFLP clones have been determined for several varieties of wheat. Analysis of these PCR products reveals extremely low levels of sequence polymorphism between the selected varieties. For the cDNAs analysed several PCR products, differing in length, result from the amplification of genomic sequences from more than one of the three wheat genomes. These PCR products have been cloned and the genome of origin of the individual fragments has been ascertained. Analysis of the sequences corresponding to cDNAs from individual wheat genomes has revealed very low rates of sequence divergence within coding and non-coding regions. Furthermore, there is a high degree of sequence conservation within coding regions between homoeologous sequences. For one of the cDNAs, the differences in length of the PCR-derived clones are clearly due to variation in intron length between the homoeologous copies of the corresponding gene. It is possible that these differences in intron size may be useful in the design of genome specific primers or probes.


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