Computer Demonstrations

Computer database and software demonstrations will be conducted all week in the "computer room", located in the California Room.

Saturday - Early Afternoon, January 15, 2011 -- 1:30 pm - 3:50 pm

1:30 pm
Resources for Plant Genomics at National Center for Biotechnology Information
Brian Smith-White
(smtwhite@ncbi.nlm.nih.gov)
National Center for Biotechnology Information, Bethesda MD

1:50 pm
CoGe: 10,000 Genomes at Your Fingertips
Eric Lyons
(ericlyons@email.arizona.edu)
iPlant Collaborative, Tuscon AZ

2:10 pm
Recent Advances at the Plant Ontology: Tools for Linking Plant Anatomy and Development to Genomics Across Plant Taxa
Ramona Walls
(rwalls@nybg.org)
The New York Botanical Garden, Bronx, NY

2:30 pm
Using SGN Resources after the Tomato Genome Sequencing
Aureliano Bombarely
(ab782@cornell.edu)
Boyce Thompson Institute for Plant Research, Ithaca NY

2:50 pm
GDR (Genome Database for Rosaceae): Building Resources for Translational Research in Rosaceae
Sook Jung
(sook_jung@wsu.edu)
Washington State University, Pullman WA

3:10 pm
BreeDB: a Database Supporting Breeding for Quantitative Traits in Crop Species
Richard Finkers
(richard.finkers@wur.nl)
Wageningen UR Plant Breeding, Wageningen, The Netherlands

3:30 pm
The Soybean Genome Database (SoyGD): Interactomes and Cultivar Variations
David Lightfoot
(ga4082@siu.edu)
SIUC, Carbondale IL

Sunday - Late Afternoon, January 16, 2011 -- 3:50 pm - 6:10 pm

3:50 pm
Accessing Information in Plant Metabolic Pathway Databases at the Plant Metabolic Network, Gramene, and the Sol Genomics Network
Kate Dreher
(kadreher@stanford.edu)
Carnegie Institution for Science, Stanford CA

4:10 pm
Pathway Networks for Cereals
Palitha Dharmawardhana
(palitha@oregonstate.edu)
Oregon State University, Corvallis OR

4:30 pm
How to Use MetaCyc and the Pathway Tools Software in Local Mode
Lukas Mueller
(lam87@cornell.edu)
Boyce Thompson Institute for Plant Research, Ithaca NY

4:50 pm
PLEXdb: the Plant and Plant Pathogen Expression Resource for Functional Genomics
Sudhansu Dash
(sdash@iastate.edu)
Iowa State University, Ames IA

5:10 pm
RiceXPro: a Database for Retrieving Gene Expression Information of Japonica Rice Grown Under Natural Field Conditions
Yutaka Sato
(satoyu@affrc.go.jp)
National Institute of Agrobiological Sciences, Tsukuba, Japan

5:30 pm
The GRIN-Global Information Management System: Public Interface Demonstration and Input Opportunity
Pete Cyr
(pete.cyr@ars.usda.gov)
USDA-ARS, Ames IA

5:50 pm
Dendrome Project and TreeGenes Database: Bioinformatic Solutions for Data Storage, Analysis, and Interpretation in Forest Genomics
Jill Wegrzyn
(jlwegrzyn@ucdavis.edu)
University of California, Davis CA

Monday - Early Afternoon, January 17, 2011 -- 12:50 pm - 3:10 pm

12:50 pm
Gramene: an On-line Resource for Plant Research
Ken Youens-Clark
(kclark@cshl.edu)
Cold Spring Harbor Laboratory, Cold Spring Harbor NY

1:10 pm
The Rice Annotation Project Database: 2011 Update and Satellite Databases
Tsuyoshi Tanaka
(tstanaka@affrc.go.jp)
National Institute of Agrobiological Sciences, Tsukuba, Japan

1:30 pm
Improvement to Oryzabase: Integrated Rice Science Database
Tohru Watanabe
(twatanab@chanko.lab.nig.ac.jp)
National Institute of Genetics, Mishima, Japan

1:50 pm
Rice TOGO Browser: a Platform to Retrieve Integrated Information for Rice Functional and Applied Genomics
Hiroshi Ikawa
(Ikawa.Hiroshi@mss.co.jp)
Mitsubishi Space Software, Tsukuba, Japan

2:10 pm
POPcorn: a Project Portal for Corn
Scott Birkett
(birkett.scott@gmail.com)
Iowa State University, Ames IA

2:30 pm
AcDs Tagging at PlantGDB: a Web Resource for Insertional Mutagenesis in Maize Using Dissociation (Ds)
Jon Duvick
(jduvick@iastate.edu)
Iowa State University, Ames IA

2:50 pm
Assembly of BAC Contigs with LTC Program
Abraham Korol
(korol@research.haifa.ac.il)
University of Haifa, Israel

Wednesday - Morning, January 19, 2011 -- 10:20 am - 12:00 noon

10:20 am
Share and Visualize RNA-Seq and Other Genome-Scale Data Sets Using Integrated Genome Browser
Ann Loraine
(aloraine@uncc.edu)
University of North Carolina, Charlotte NC

10:40 am
VCMap: a Comparative Genomics Viewer and Database Designed to Facilitate Genomic Discovery
James Koltes
(jekoltes@iastate.edu)
Iowa State University, Ames IA

11:00 am
DNA Subway Makes Genome Analysis Broadly Available to Students and Educators
David Micklos
(micklos@cshl.edu)
Cold Spring Harbor Laboratory, Cold Spring Harbor NY

11:20 am
SNiPlay: a Web-based Tool for Detection, Management and Analysis of SNP
Robert Bacilieri
(bacilier@supagro.inra.fr)
UMR DIAPC, INRA, Montpellier, France

11:40 am
psRNATarget: a Plant Small RNA Regulator Target Analysis Server
Patrick Xuechun Zhao
(pzhao@noble.org)
The Samuel Roberts Noble Foundation, Ardmore OK

Should you wish to demo any computer system and/or present an "electronic poster" during the meeting, please submit an abstract for "Computer Demonstration" on the Abstract submissions form. Selecting this option will provide you with the option of solely presenting the "Demonstration Only" or to present a "Demonstration and Poster".

Please note that any software which is demonstrated at PAG must be available to the scientific community (either as freeware or shareware).

It is expected that at least 20 computers will be available in the California Room for e-mail, telnet, and web access.

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This page last updated Wed Nov 24 16:32:56 EST 2010