PAG-XVIII Plant & Animal Genome XVIII Conference Abstracts


Abstracts for the Plant & Animal Genome XVIII Conference held January 9 - 13, 2010 in San Diego, California are grouped below into the categories of workshops, posters and computer demonstrations. If the computer demonstration also has a poster it is listed as "CP"; the number is the poster placement. Posters were Removed if they were not in their assigned positions during the conference.

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Workshop: Abiotic Stress

W002  Shared Drought And Salinity Resistance Mechanisms In Arabidopsis And Crop Plants
             Schroeder, Caddell, Yao, Lee, Wang, Brodsky, Xue, Horie, Park, Cutler, Yates, Hitomi, Arvai, Getzoff, and Nishimura

W004  Dissection Of Dehydration Avoidance, Root Water Uptake And Drought Resistance Mechanisms In Rice
             Serraj, Henry, Gowda, Kumar, McNally, Kikuchi, Yamauchi, and Kobayashi

W005  Can Poly-Genic And Largely Constitutive Drought-Adaptation Traits Be Fine-Mapped?
             Borrell, George-Jaeggli, Jordan, Mace, Klein, and Mullet

W006  Research And Product Development In The Water Optimization Program At Syngenta
             Kishore, Wang, Chen, Clarke, Gandhi, Chaulk-Grace, Prest, and Zinselmeier

Workshop: Allele Mining

W008  Mike Gale: Wheat Genomics Pioneer
             Devos

W009  Allele Mining In Grape For The Analysis Of Complex Traits
             Bacilieri, Nicolas, Bounon, Dereeper, Le Paslier , Guichard, Canaguier, Thareau , Le Cunff , Péros, Brunel, Doligez, Laucou, Lacombe, Boursiquot, Adam-Blondon, and This

W010  Mining Germplasm Resources And Association Analysis Datasets For MAS Targets
             Blake

W011  Artificial Selection For Determinate Growth Habit In Soybean
             Tian, Wang, Lee, Li, Specht, Nelson, McClean, Qiu, and Ma

W012  Understanding And Unlocking Cowpea (Vigna unguiculata) Genetic Diversity - Resource Generation.
             Hearne

W013  What You See Is What You Get: SCRI Visualization Tools For SNP Discovery, Genotype Analysis And Comparative Mapping
             Marshall, Milne, Bayer, Shaw, Cardle, Stephen, Ramsay, Comadran, Thomas, Russell, Flavell, and Waugh

Workshop: Alternative Splicing

W015  Novel Alternative Splicing Patterns In An Interspecific Plant Hybrid Compared With Its Parents
             Scascitelli, Cognet, and Adams

W016  A Conserved Alternative Splicing Event In Plants Reveals An Ancient Exonization Of 5S rRNA.
             Barbazuk, Fu, Bannach, Chen, Teune, Schmitz, Steger, and Xiong

W017  Alternative Splicing Of Splicing Related Genes In Plant Genomes
             Duvick, Chen, Chou, and Brendel

W018  Alternative Splicing Of Pre-mRNAs In Plants In The Postgenomic Era
             Reddy, Ali, Palusa, and Thomas

W019  Transcriptome Mapping And Cataloging Of Alternative Splicing In Arabidopsis
             Filichkin, Priest, Givan, Shen, Bryant, Fox, Wong , and Mockler

Workshop: Animal Epigenetics

W021  Epigenetics Studies In Cattle: cDNA Cloning, DNA Methylation, Gene Expression And Imprinting Analysis Of Some Genes In Cattle.
             Imumorin, Jain, De Donato, Bates, Okpeku, and Hansen

W023  Epigenetic Changes Induced By MDV Infection In Chickens
             Song

W024  Characterization Of Conserved And Nonconserved Imprinted Genes In Swine
             Freking, Bischoff, Tsai, Hardison, Motsinger-Reif, Nonneman, Rohrer, and Piedrahita

W026  Upregulation Of Imprinted Genes In Mice: An Insight Into The Abundance Of Gene Expression And The Evolution Of Genomic Imprinting
             Khatib, and Zaitoun

Workshop: Animal Genome

W028  Utility Of Genetically Modified Swine
             Prather

W029  Recent Advances In Sheep Genomics
             Cockett, McEwan, Dalrymple, Wu, Kijas, Maddox, Oddy, Nicholas, and Raadsma

W030  Analyses Of The Equine mRNA Transcriptome Using RNA-Seq
             MacLeod, Coleman, Prins, and Liu

W031  Genetically Engineered Animals: Regulation, Research, And Opportunities For Collaboration
             Rudenko

Workshop: Apomixis

W033  Origins Of Apomixis In Natural Populations: Case Studies In Ranunculus
             Hoerandl

W034  Identification And Characterization Of ASGR-BABY BOOM-Like (ASGR-BBML) , A Candidate Apomixis Gene Identified In Pennisetum squamulatum And Cenchrus ciliaris
             Conner, Zeng, Huo, Albertini , Hanna, and Ozias-Akins

W035  Is APOSTART Part Of A Cluster Controlling Plant Reproduction?
             Marconi, Raggi, Conner, Vigilante, Galla, Masiero, Vanzulli, Ozias-Akins, Chiusano, Sharbel, Barcaccia, Colombo, Falcinelli, and Albertini

W036  Apomictic And Sexual Ovules Of Boechera Display Heterochronic Global Gene Expression Patterns
             Sharbel, Voigt, Corral, Kumlehn, Klukas, Schreiber, Vogel, and Rotter

W037  Inheritance Of Apomixis And Its Components In Hypericum perforatum L.
             Galla, Schallau, Sharbel, Baumlein, and Barcaccia

W038  Expression Profiling Of Ovules And Anthers From Apomictic And Sexual Boechera (Brassicaceae)
             Carman, Dwivedi, Roche, and Ganesan

Workshop: Aquaculture

W040  Rnaseq Annotation Of The Expressed Zebrafish Protein-Coding Genome
             Collins, White, Searle, and Stemple

W041  Characterization Of The Rainbow Trout Transcriptome Using Sanger And 454-Pyrosequencing Approaches
             Salem, Rexroad III, Wang, Thorgaard, and Yao

W042  Progress In Development Of Genomic Resources For Tilapia
             Kocher

W044  Development Of An Atlantic Cod (Gadus morhua) Oligonucleotide Microrarray And Its Use For Studying Cod Tissue Global Gene Expression Responses To Immune Stimuli
             Booman, Borza, Hori, Feng, Higgins, Hall, Rise, Gamperl, Hubert, Kimball, Johnson, Bowman, and Rise

W046  The Transcriptomics Of Hybrid Performance And Parental Effects In Brook Charr (Salvelinus fontinalis)
             Bougas, Audet, and Bernatchez

W047  Functional Genomic Research On Atlantic Cod Responses To Heat Stress And Immune Stimuli
             Rise, Hori, Feng, Hall, Booman, Gamperl, Rise, Hubert, Kimball, Bowman, and Johnson

W049  Selective Breeding Of Food Size Rainbow Trout: Current And Future Prospects
             LaPatra, and Towner

W050  From QTL Mapping To Detection Of Genome Wide Selection Signatures Using SNP Arrays In Salmon: The Case Of A Complex-Trait, Complex-Population History.
             Martinez

W051  Current Status Of Asian Seabass Genomics
             Yue, Xia, Wang, Bai, He, Tan, Lin, Pang, Liu, Lim, Chou, and Yue

W052  Comparative Genome Sequencing: Low Price – High Value
             Dodgson

W053  The Genome Sequence Of Oyster
             Ni, Zhang, Fan, Guo, Li, Liu, Yang, Jiang, and Wang

W054  Some Advances Of Omics’ Studies In Shrimp Of China
             Xiang , Li, Zhang, Wang, Jiang, Zhang, Zhang, and Zhang

W055  Alternative Splicing In Teleost FISH Genomes: Cross-Species Analysis And Comparisons
             Jianguo

Workshop: Arthropod Genomics

W057  Hemipteran Genomics And Psyllid Gene Expression
             Hunter, Marutani-Hert, and Hall

W058  Transmission Of Bacterial Plant Pathogens By Hemipteran Vectors: The Intersection Of Genomics And Classical Vector Biology
             Bextine, Hunter, Hail, and Spencer

W059  P450’s Identification In Two Economically Important Psyllids
             Tamborindeguy, Hunter, and Bextine

W060  Plant DNA-Vector Stimulates RNAi Response To Manage Insects
             Peretz, Sela, Huet, Lapidot, Hunter, and Yarden

W061  Development Of IL-60 System In Potato To Reduce Zebra Chip Symptoms
             Bextine, Timmons, and Hunter

W062  RNAi At Work: Targeting Invertebrate Pests And Beneficial Organisms’ Diseases
             Ben-Chanoch, Ellis, Glick, Hunter, Maori, Paldi, Sela, and Yarden

Workshop: Avocado

W064  Outcrossing In Florida And California Commercial Avocado (Persea americana Mill.) Orchards Estimated Using Microsatellite Markers And The Development Of A Genetic Linkage Map
             Schnell, Borrone, Brown, Tondo, and Kuhn

W065  Genetic Transformations Of Avocado
             Litz

W067  Stepping Toward A Gene Expression Atlas Of Avocado Development
             Chanderbali, Gitzendanner, Ayyampalayam, Leebens-Mack, Soltis, and Soltis

W068  Insights From Molecular Markers For The Study Of Avocado Improvement And Genetics
             Ashworth, Calderon-Vazquez, Durbin, Tommasini, and Clegg

W069  Germplasm Characterization And Selective Fruit Abscission In Avocado (Persea americana Mill.) Using Microsatellite Markers
             Hormaza, and Alcaraz

Workshop: Banana

W071  Analysis Of The Genetic Diversity Of Banana And Plantain Using SRAP And AFLP
             Youssef, Rivera, James, Ortiz, and Escobedo-GM

W072  From The Analysis Of Genetic Diversity And Phylogenetic Relationships To Reliable Genotyping In The Genus Musa
             Nemcova, Hribova, Valarik, Roux, and Dolezel

W073  Homology Among Fungal Effectors Of Banana, Wheat And Tomato Pathogens
             Kema, Stergiopoulos, Van den Burg, Okmen, Beenen, and De Wit

W074  Development Of RGA-CAP Markers For Genetic Mapping Of Candidate Resistance Gene(s) In Musa.
             Suthanthiram, Subbraya, Chelliah, Marimuthu, and Gopal

W075  MusaTract: Sequencing Of The Banana (Musa acuminata) Whole Genome
             Charron

W076  Towards A Bioinformatics Platform For The Musa Research Community
             Rouard, Argout, Bocs, Conte, Droc, Guignon, Hamelin, Roux, and Ruiz

W077  Decode The Whole Genome For Plant Improvement
             Yang, Li, Xu, Ni, Huang, Li, and Wang

Workshop: Barley

W079  Multiple WRKY-Factor Binding Sites In The Promoters Of The GER4 Gene Cluster Of Barley Cause High Transcript Dosage Upon Pathogen Attack
             Himmelbach, Liu, Zierold, Altschmied, Maucher, Beier, Müller, Hensel, Heise, Schützendübel, Kumlehn, and Schweizer

W080  Whole Genome Association Scans In Stratified Germplasm Collections
             Waugh, Russell, Dawson, Ramsay, Comadran, Thomas, Marshall, Xu, and Flavell

W081  Functional Evolution Of Vrs1, A Homeodomain-Leucine Zipper Transcription Factor For Row Number In Barley Spikes
             Sakuma, Pourkheirandish, Matsumoto, Sassa, Koba, and Komatsuda

W082  Evolution Of The (1,3;1,4)-Beta-Glucan Synthase Gene Family In Barley
             Fincher

W083  Advancing The Barley Genome: The American Contribution
             Close

W084  Physical Mapping And Sequencing Of The Barley Genome: IBSC And The GABI Program
             Stein

Workshop: Bioinformatics

W086  Gene Order Comparison With Contigs And Scaffolds
             Muñoz, and Sankoff

W089  Comparative Multi Genome Annotation With Gnomon
             Souvorov

W090  TAGdb: A Tool For Gene And Promoter Discovery In Complex Plant Genomes
             Duran, Marshall, Eales, Imelfort, Berkman, McKenzie, Hayward, Batley, and Edwards

Workshop: Brachypodium

W092  Natural And Induced Variation In Brachypodium distachyon Cell Walls
             Tyler, Steinwand, Laudencia-Chingcuanco, and Vogel

W093  Natural Variation Of Flowering Time And Vernalization Responsiveness In Brachypodium distachyon
             Schwartz

W094  Dissection Of Quantitative Resistance To Leaf Rust (Puccinia Brachypodii) In Brachypodium distachyon
             Barbieri, Francia, Garvin, Marcel, Niks, and Pecchioni

W095  Universal Genome Array And Transcriptome Atlas For Brachypodium distachyon
             Fox, Priest, Bryant, Wilhelm, Michael, and Mockler

W096  BrachyTAG: T-DNA Insertional Mutagenesis In Brachypodium distachyon (Genotype Bd21).
             Vain

W097  Comparative Analysis Of The Brachypodium distachyon Genome.
             Bevan, Febrer, Wright, Yang, McKenzie, Harberer, Gundlach, Spannangl, Schulman, Wicker, Salse, McCombie, Kersey, Birney, and Mayer

Workshop: Brassicas

W099  Map-Based Cloning Of A Blackleg Disease Resistance Gene In Allotetraploid Brassica napus
             Li, Long, Zheng, Wang, Chen, Fernando, and McVetty

W100  Knowledge Transfer, Reverse Genetics And Mutant Screens To Understand Brassica Fruit Development
             Ostergaard

W101  Large Scale Genetic Map Integration To Facilitate Navigation Within And Between Brassica A And C Genomes
             Wang

W102  Development Of Tools For The Analysis And Visualisation Of Second Generation Sequencing Data For Brassica Species
             Duran, Stiller, Eales, Imelfort, Boskovic, Hong, Berkman, Marshall, McKenzie, Hayward, Raman, Batley, and Edwards

W103  Functions Of TOR Signalling In Brassica And Arabidopsis
             Datla, Ren, Qiu, Daoquan, Venglat, and Selvaraj

W104  The Genome Of Brassica rapa
             Wang

Workshop: Cacao Genome Sequencing

W106  A Genetically Anchored Physical Map Of The Cacao Genome
             Saski, Blackmon, Staton, Ficklin, Feltus, Schnell, Motamayor, and Kuhn

W107  The Detection And Utilization Of Disease Resistance, Quality, And Productivity QTLs In Cacao Breeding
             Schnell, Brown, Tondo, Kuhn, Phillips, Amores, Suarez-Capello, Takrama, and Motamayor

W108  T. cacao Genome Sequencing
             Scheffler, Duke, Bouffard, Harkins, and May

W109  T. cacao Transcriptome Sequencing
             Mockaitis, Kuhn, Mohiuddin, Kodira, Main, Haiminen, May, Saski, Scheffler, Schnell, Harkins, Motamayor, and Shapiro

W111  Genome Assembly Validation
             Haiminen, and Rigoutsos

W112  The Need For An Assembly Pilot Project
             Kuhn, Saski, Feltus, Haiminen, Main, May, Schnell, Motamayor, Mockaitis, Scheffler, and Shapiro

W114  Linkage Disequilibrium In Theobroma cacao L. Populations
             Motamayor, Brown, Kuhn, and Schnell

W115  Status Of Cacao Breeding In Hawaii
             Nagai, Heinig, Motamayor, and Schnell

W116  The Cacao Breeding Program At Catie, Costa Rica
             Phillips-Mora

W117  Status Of Cacao Breeding In Ghana
             Padi, Opoku, Adomako, Adu-Ampomah, Motamayor, Kuhn, Schnell, and Takrama

W118  The Marker Assisted Selection Of Cocoa (Theobroma cacao L.) In Cameroon: Improving Phytophthora Pod Rot Resistance And Other Agronomic Traits Through Association Mapping
             Ives Bruno

W119  Status Of Cacao Breeding In Cote dIvoire
             Desire, Mathias, Jeanne, Juan-Carlos, Raymond, David, and Bertus

Workshop: Cassava

W122  Cassava Genomics: Bridging The Gap Between Sequence And Breeding Applications.
             Rounsley, Rabinowicz, Kodira, and Rokhsar

W123  Identification And Characterization Of Genomic And Expressed NBS-LRR Type Resistance Gene-Like Sequences In Cassava And Its Wild Relatives
             Gedil

W124  Impact Of The Cassava Genome Sequence On The Global Cassava Partnership
             Fauquet

W126  Progress Of Cassava Genome Sequencing In China
             Liu, Wang, Li, Zhang, Chen, Feng, Carvalho, and Peng

Workshop: Cattle/Sheep

W128  Comparison Of The Segmental Duplication Pattern On Two Cattle Genome Assemblies Using FISH
             Liu

W129  Mapping QTL For Aseasonal Reproduction And Milk Production In Sheep
             Mateescu, and Thonney

W130  Whole Genome Association With Susceptibility To Infectious Disease: Ovine Progressive Pneumonia/Maedi-Visna Virus
             White, Mousel, Knowles, Lewis, and Herrmann-Hoesing

W131  Microarray Analysis Of Gene Expression Changes Induced During Horn And Scurs Development In Cattle
             Mariasegaram, Reverter, Barris, Lehnert, and Prayaga

W132  The Impact Of Selection On The Sheep Genome: Findings From The ISGC HapMap Experiment.
             Kijas, and Genomics Consortium

W133  Putting The Sheep SNP50 BeadChip To Work: Case Studies In Gene Mapping And Genomic Selection
             McEwan, Pickering, Dodds, Auvray, Johnson, Tecofsky, and Wilson

W134  Linkage Disequilibrium In The Sheep Genome: Findings From The ISGC HapMap Initiative
             Raadsma, and Int. Sheep Genomics Consortium

W135  The Latest High-Quality Bovine Genome Assembly, UMD Bos taurus 3.0.
             Zimin, Puiu, Marcais, Delcher, Yorke, and Salzberg

W136  MicroRNA Expression In Bovine Subcutaneous Fat Tissues: A Potential Regulatory Mechanism Of Adipose Tissue Development
             Guan, Jin, Dodson, Moore, and Basarab

W137  Expected Effects On Protein Yield (PY) Of Cumulative Long Term Selection At QTL Affecting Milk Yield (MY) And Milk Protein Percent (PP) In Dairy Cattle
             Lipkin, Bagnato, and Soller

W138  Information Theoretical Analysis Of A Bovine Gene Atlas Reveals Chromosomal Regions With Tissue Specific Gene Expression
             Sonstegard, Harhay, Alexander, Schroeder, Keele, Matukumalli, Bridges, Burgess, Van Tassell, and Smith

Workshop: Challenge Program

W140  Genomewide SNP Patterns In Rice Reveal Historical And Recent Introgressions
             McNally, Childs, Bohnert, Davidson, Zhao, Ulat, Zeller, Clark, Hoen, Bureau, Stokowski, Ballinger, Frazer, Cox, Padhukasahasram, Bustamante, Weigel, Mauleon, Mackill, Bruskiewich, Rätsch, Buell, Leung, and Leach

W141  SNP Discovery, Validation, And Mapping In Groundnut
             Knapp

W142  Elucidating The Molecular And Genetic Basis For Aluminum Tolerance In Sorghum, Maize And Rice
             Kochian, Magalhaes, Liu, Guimaraes, Maron, Pineros, Schaffert, Alves, Shaff, Famoso, and McCouch

W143  Delayed Leaf Senescence Induces Extreme Drought Tolerance In Crop Plants
             Peleg, Rivero, Walia, Tumimbang, and Blumwald

W144  A GCP Challenge Initiative: Drought Tolerance Improvement For Sorghum In Africa
             Rami, Teme, Vaksmann, Lespinasse, Billot, Bouchet, Hash, Deshpande, Ramu, Senthilvel, Upadhyaya, Weltzien, Rattunde, Jordan, Borrell, Paterson, Kresovich, Glaszmann, and Niangado

W145  Statistical Genetics Within The GCP-Molecular Breeding Platform: Creating A Sustainable Statistical Support System For The Future
             Bink, Malosetti, Jansen, Chapman, Eeuwijk, and van

Workshop: Citrus

W147  Genomics And Post-Genomics Approaches For The Identification Of Salt Tolerance And Chloride Homeostatic Mechanisms In Citrus.
             Brumós, Colmenero-Flores, Iglesias, López-Climent, Gómez-Cadenas, and Talón

W148  Transcriptomic, Proteomic, And miRNAomic Studies In A Sweet Orange Red-Flesh Mutant
             Xu, Yu, Pan, Liu, Zhu, Liu, and Deng

W149  Omics Study Toward Understanding Parthenocarpy Of Citrus
             Shimizu, Kotoda, Nesumi, Yoshioka, Kita, Yano, Fujii, and Endo

W150  Analysis And Validation Of Microarray Gene Expression Data For Phytophthora Gummosis Resistance In Poncirus trifoliata, Sunki Mandarin And Their Hybrids
             Boava, Yaly, Takita, Mafra, Kishi, and Machado

W151  Transcriptome Profiling Of Host Responses To Huanglongbing In Mature Citrus Fruits
             Dandekar, Federico, Ute, Uratsu, and Bowman

W152  The Citrus Genomics Database
             Main, Jung, Gmitter, Chen, Abbott, Staton, and Mueller

Workshop: Coffee Genomics

W154  Drought Tolerance In Coffee: Identification Of Candidate Genes And Study Of Its Natural Variation
             Marraccini, Freire, Vieira, Alves, Vinecky, Leroy, Rodrigues, Guerra, and Andrade

W155  Coffea (Asterids) And Vitis (Rosids) Derive From The Same Paleo-Hexaploid Ancestral Genome
             Cenci, Combes, and Lashermes

W156  in silico Characterization Of Gene Families Present In The Coffe Genome (Coffea sp.)
             Cristancho, Salcedo, Gaitan, Arcila, Aldwinckle, and Yepes

W157  Gene Expression Divergences Between The Allopolyploid Coffea arabica And Its Diploids Relatives Appear Environment-Dependant
             Bardil, Combes, Lashermes, and Bertrand

W158  Progress On The Preliminary Sequence Of The Coffea canephora Genome
             de Kochko, Albert, Andrade, Giuliano, Graziosi, Henry, Ming, Nagai, Rounsley, and Sankoff

W159  de novo Genome Assembly From The Next Generation Sequencing Data.
             Zimin, Salzberg, and Yorke

Workshop: Comparative Genomics

W161  Gene Order Reconstruction Problems
             Sankoff

W162  Dominant Mechanism Of Basic Chromosome Number Reduction In The Grass Family
             Dvořák

W163  Towards Fine Genetic Mapping And Cloning Of Wheat Disease Resistance Genes By Comparative Genomics Approach
             Liu, Zhang, Zhu, Liu, Cui, Wu, Li, Ouyang, Zhao, Xie, Yang, and Sun

W164  Paleogenomics In Cereals For Trait Improvement
             Salse

W166  Comparative Genomics Within The Genus Oryza At Centromeres And The Hd1 Locus.
             Sanyal, Gao, Ma, Wing, Jiang, and Jackson

Workshop: Compositae

W170  Sequencing The Sunflower Genome
             Kane, Knapp, Burke, Vincourt, and Rieseberg

W171  Transcriptome And Gene-Space Sequencing Of Lettuce
             Matvienko, Kozik, Xu, Lavelle, McHale, Truco, Ochoa, and MIchelmore

W172  Gerbera As A Model For Asteraceae: Evolution Of The Capitulum, And New Genomic Resources
             Teeri, Ruokolainen, Broholm, Rijpkema, Tähtiharju, Ruonala, Elomaa, and Albert

W173  Using The Lettuce Tiling Array And RILs To Identify Candidate Genes Underlying QTL For Antioxidant Status.
             Taylor, Tallis, Biggi, Truco, and Michelmore

Workshop: Connectrons

W175  Connectrons As A Multi-Level Programming Language
             Feldmann

Workshop: Cool Season Legumes

W177  Fragile Sites Explain Part Of The Rearrangement Of Gene Order In Cool Season Legumes
             Weeden, Walling, and Moffet

W178  Studies Of Genome Evolution In Papilionoid Legumes
             Penmetsa, Carrasquilla-Garcia, Rosen, Gao, Sarma, Datta, Vail, Garzon, Bett, Vandenberg, Woodward, Blair, Bertioli, May, He, Bruening, Varshney, and Cook

W179  Developing Genomic Resources For Enabling Genomics-Assisted Breeding In Chickpea (Cicer arietinum L.)
             Varshney, Nayak, Hiremath, Thudi, Sivakumar, Woodward, Thakur, Gujaria, Jahnavi, Srivani, Farmer, Kashiwagi, Xiao, Sharma , Gaur, Tripathi, Ganga Rao , Kimurto, Eshete, Kileo, Kavi Kishor , Srinivasan, Town , Kilian, May, and Cook

W180  454 Transcript Profiling For SNP Discovery In Pulse Crops
             Sharpe, Li, Sidebottom, Qiu, Links, Sanderson, Vijayan, Vandenberg, Bett, Taran, Warkentin, Datla, Selvaraj, Bekkaoui, Murrell, and Keller

W181  Comparative Genomics Of Legume Disease Resistance Gene Homologs
             Rosen, Farmer, Gao, Vail, Garzon, Goes Da Silva, Steiner, Carrasquilla Garcia, Udvardi, May, He, Bruening, and Cook

W182  Integrating Genomics In Pigeonpea Hybrid Breeding
             Saxena, Saxena, Kumar , Kavi Kishor, Xiao, Cook, Town, and Varshney

Workshop: Cucurbit

W184  Transcriptomic Analysis Of Early Fruit Development In Cucumber (Cucumis sativus).
             Grumet, and Ando

W185  Isolation And Genetic Mapping Of NBS-LRR Disease Resistance Gene Analogs In Watermelon
             Harris, Wechter, and Levi

W186  Whole Genome Scan- A Tool For Genetic Analysis In Melon
             Sherman, Eshed, Harel-Beja, Tzuri, Portnoy, Cohen, Uliel, Burger, Schaffer, Katzir, and Ophir

W187  Mechanisms Of Resistance To Viruses In Melon
             Truniger, Gonzalez-Ibeas, Gosalvez, Kassem, Rodriguez-Moreno, and Aranda

W188  Molecular And Cytogenetic Characterization Of Watermelon Using DNA Markers And FISH
             Padma, Islam-Faridi, Tomason, Ponnaiah, and Reddy

W189  Updates On Cucurbit Genomics Database
             Fei

W190  The Genome Of The Cucumber, Cucumis sativus L.
             Huang

Workshop: Database Resources at the EBI

W192  Ensembl And Ensembl Genomes - Access To Genome-Scale Data Across The Taxonomic Space
             Overduin, Team, and Team

W193  The Vertebrate Genome Annotation Database (VEGA)
             Loveland

W194  Annotation Of Plant Proteins In UniProtKB/Swiss-Prot
             Schneider, team, and consortuim

W195  Automatic Annotation Of Genomes And Proteomes - Using InterPro, GO And Reactome
             Orchard

Workshop: Engineering Nitrogen Use Efficiency

W197  Engineering Ammonium Assimilation In Transgenic Poplar By Ectopic Expression Of Glutamine Synthetase
             Man, Molina, Tsai, and Kirby

W198  An Attempt To Improve Nitrogen Utilization Efficiency Of Crops: Genetic Modification With Dof1 Transcription Factor
             Yanagisawa

W199  The GDH Technology: WUE, NUE, The Microbiome And Fungal Resistance
             Mansour, Jasim, Abburi, Fakhoury, and Lightfoot

W200  Genetic Engineering Of Key Steps In N And C Metabolic Pathways Along With A Modeling Approach To Identify Key Steps In Nitrogen Use Efficiency
             Sengupta-Gopalan, Holguin, Ortega, Seger, and Song

W201  Microarray Profiling Of Nitrate Responsive Genes In Rice
             Pathak, Dubey, and Raghuram

Workshop: Equine

W203  Statistical Analysis For WGA Studies
             Mezey

W204  Linkage Disequilibrium Mapping Of Osteochondrosis And Growth Traits In Horses
             Distl, Lampe, Komm, and Dierks

W205  A Genetic Association Between SNPs In Low Density-Lipoprotein Receptor-Related Protein (LRP5) And Risk Of Fracture In The UK Thoroughbred
             Murphy, Verheyen, Swindlehurst , Trojer , Tully, Hillyer , Binns, Vaudin, and Price

W206  Quantification Of Skeletal Variation In The Horse: Preliminary Work Towards Mapping Of QTLs For Morphometric Traits.
             Brooks, Chu, Allen, Streeter, Gu, McCleery, Makvandi-Nejad, Bellone, and Sutter

W207  A Comparison Of Different Approaches For Mutation Detection In Large Genomic Regions
             Leeb, Haase, Drögemüller, Owczarek-Lipska, Braunschweig, Sigurdsson, Lindblad-Toh, and Drögemüller

W208  High Throughput Sequencing Analysis For Equine Mirna Discovery.
             Adelson, and Raison

W209  Genome-Wide Transcriptome Analysis Of Laminar Tissue During Early Stages Of Carbohydrate Overload And Insulin Induced Equine Laminitis
             Wang, Seabury, Zhou, Galantino-Homer, Carter, Pollitt, Laat, Belknap, and Chowdhary

W210  Transcription Of LINE-Derived Sequences In Exercise-Induced Stress In Horses
             Capomaccio, Verini-Supplizi, Galla, Vitulo, Barcaccia, Felicetti, Silvestrelli, and Katia

W211  Gene Expression Profiling In Equine Recurrent Airway Obstruction (RAO): Detection Of Differentially Expressed Genes And Their Role In Pathogenesis Of The Disease
             Kachroo, Gustafson-Seabury, Lefebvre-Lavoie, Lavoie, Ivanov, and Chowdhary

W212  A Community SNP Genotype Resource For Equine Whole Genome Association Mapping
             Wade

W213  An Equine Genome Model Organism Database
             Adelson

Workshop: Evolution of Genome Size

W215  Evolution Of Genome Size Since The Divergence Of Sorghum And Rice
             Paterson, Bruggmann, Gundlach, Haberer, Mitros, Tang, Wang, Wicker, Peterson, Mayer, Messing, and Rokhsar

W216  The Dynamic Equilibrium Of Genome Size In Plants
             Wicker, Stein, Buchmann, and Keller

W217  The Evolution Of Genome Size And Sex Chromosomes In Papaya And Related Species
             Ming, Wu, Zee, and Yu

W218  Evolution Of Maize Abnormal Chromosome 10 And Its Impact On The Maize Genome
             Kanizay, Shan, Peterson, and Dawe

W219  Chromosomal Distribution Of Pine Repetitive DNA Sequences
             Nurul, Magbanua, Majid, Butnor, Peterson, and Nelson

Workshop: Forage & Turf Plants

W221  Gene Discovery, Functional Genomics And Gene Transfer For Increased Nodulation And Nitrogen Fixation
             Gresshoff, Ferguson, Reid, Lin, Lin, Hayashi, Meksem, Mirzaei, Li, Liu, Chen, Batley, and Indrasumunar

W222  Application Of CRES-T (Chimeric Repressor Gene-Silencing Technology) To Improve Digestibility, To Create Male Sterility And To Confer Abiotic Stress Tolerance On Tall Fescue And Italian Ryegrass
             Sato, Takamizo, Kimura, Koiwai, Matsui, Mito, Mitsuda, and Ohme-Takagi

W223  Identification And Mapping Of Nucleotide Binding Site-Leucine Rich Repeat Resistance Gene Analogs In Bermudagrass
             Harris, Schwartz, Paterson, and Brady

W225  Genetic Modification Of Switchgrass For Improved Biofuel Production
             Fu, Xiao, Xi, Ge, Hamilton, Mielenz, Chen, Bouton, Dixon, and Wang

W226  Lessons From A Decade Of Frost Tolerance Research Using Forage Grasses As A Model System
             Sandve, Kosmala, Rudi, Fjellheim, Rapacz, and Rognli

Workshop: Forest Trees

W228  Epigenomic Analysis Of Populus trichocarpa Tissues From Differing Developmental Stages
             Vining, Pomraning, Wilhelm, Dharmawardhana, Priest, Shevchenko, Ma, Zhu, Etherington, Mockler, Freitag, and Strauss

W229  Whole Genome Shotgun And BAC Sequences In Loblolly Pine (Pinus taeda L.): The Majority Of The 22-Gb Genome Appears To Be Highly Diverged And Nested Repetitive Elements.
             Stambolia-Kovach, Wegrzyn, Parra, Holt, Hartigan, Nicolet, Bruening, Troggio, Loopstra, Yandell, Korf, Langley, and Neale

W230  Shotgun Proteomics As A Systems Biology Tool To Study Feedstock Characteristics Of Populus
             Kalluri, Abraham, Hurst, Yang, Giannone , Jawdy, Tuskan , and Hettich

W231  Cytological Distribution Of Pine Repetitive DNA Sequences
             Islam-Faridi, Butnor, Majid, Magbanua, Peterson, and Nelson

W232  Next Generation Transcriptome Resequencing In Multiple Populus trichocarpa Individuals: Genetic Diversity And Genome-Wide Analysis Of mRNA Processing And Gene Expression
             Douglas, Geraldes, Bao, Wang, Hannemann, , Thiessen, Zhao, Pang, Marra, Friedmann, Ehlting, El-Kassaby, Mansfield, and Cronk

W233  Prelude To A Genome: de novo Assembly, Annotation And Profiling Of An Expressed Gene Catalog Of A Fast-Growing Eucalyptus Hybrid Clone Using Illumina mRNA-Seq
             Mizrachi, Hefer, Ranik, Joubert, and Myburg

W234  Analyses Of The Transcriptome Of The Fagaceae Species
             Barakat, Carlson, Staton, Kubisiak, Smith, DiLoreto, Baier, Atkins, Blackmon, Ficklin, Hebard, Sisco, Powell, Anagnostakis, Nielsen, Abbott, Wheeler, and Sederoff

W235  Genetic Variability In The Conifer Wood Transcriptome
             Mackay, Bomal, Boyle, Caron, Giguère, Poulin, Deslauriers, Clément, Lenz, Dallaire, Rigault, and Beaulieu

W236  Regulation And Modeling Of Lignin Biosynthesis: A Systems Biology Approach
             Chiang, Sederoff, Ralph, Ducoste, Isik, Williams, Muddiman, Smith, Chang, Wang, Chen, Shi, Sun, Li, Yang, Nishimura, Ghiladi, and Capanema

W237  Genomic Selection In Eucalyptus: Marker Assisted Selection Coming To Reality In Forest Trees
             Grattapaglia, Sansaloni, Petroli, Resende Jr. , Faria, Missiaggia, Takahashi, Zamprogno, Kilian, and Resende

W238  Conservation Of Single Nucleotide Polymorphisms In 44 Wood Quality Candidate Genes Of Eucalyptus globulus, Eucalyptus pyrocarpa And Eucalyptus pilularis
             Sexton, Henry, McManus, Thomas, and Shepherd

W239  Functional Variability Of Candidate Genes Involved In The Lignification Process In Eucalyptus
             Mandrou, Beydon, Chaix, Vigneron, Plomion, and Gion

W240  Patterns Of Nucleotide Diversity And Associations To Environmental Heterogeneity Across The Functional Gene Space Of Loblolly Pine (Pinus taeda, Pinaceae)
             Eckert, Wegrzyn, Lee, Liechty, Stevens, Jermstad, Woolf, Tao, Nelson, Gonzalez-Martinez, Langley, and Neale

W241  One Hundred Gene Regions Indicate Low Structure Among Populations Of Populus balsamifera
             Thompson, Lamothe, Levee, Seguin, Meirmans, Schroeder, and Isabel

W242  TreeSNPs And Phenotree Databases: Arborea's Integrated Data Resources For Conifer Genomics
             Clément, Fillon, Bousquet, and Beaulieu

W243  ConiferGDB: Current Status And Future Direction
             Liang, Liu, Wimalanathan, Raj Kumar, Zhao, Bonello, Echt, Sun, Sederoff, and Dean

W244  Bioinformatic Solutions For Data Storage, Analysis, And Interpretation In Forest Genomics: Overview Of The Tools And Resources From The Dendrome Project
             Wegrzyn, Figueroa, Choi, Liechty, Eckert, and Neale

W245  GCAT_WS: Arborea White Spruce Gene Catalogue And Collaborative Web Interface
             Rigault, Boyle, Bousquet, and MacKay

Workshop: Fruit and Nut Crops

W247  On The Prediction Of Genomic Breeding Values In Fruit Crops
             Bink, Jansen, Voorrips, Weg, and van de

W248  Unraveling Whole Genome For Plant Improvement
             Yang, Li, and Wang

W249  Full Genome Sequencing Of The Woodland Strawberry, Fragaria vesca
             Shulaev, Aharoni , Allan, Arús, Ashman, Bassil, Borodovsky, Burns, Crasta , Crowhurst, Davik, Davis , Delcher, Denoyes-Rothan, Dickerman, Dhingra, Evans, Filichkin, Folkerts, Hancock, Hellens, Holt, Jaiswal, Jensen, Korban , Liston, Lomsadze, Mane, Meisel, Michael, Mittler , Mockaitis, Mockler, Monfort, Priest, Ruiz-Rojas, Salzberg, Sargent, Schwab, Setubal, Silva, Slovin, Veilleux, Velasco, Viola, and Folta

W250  The Peach Genome Sequence And Its Utility For Comparative Genomics
             Sosinski, Jung, Verde, Schmutz, Scholl, Staton, Abbott, Main, Morgante, and Rokhsar

W251  An Extensive Comparative Mapping Study Between Fragaria And Prunus Using Rosacous Conserved Orthologue Set (RosCOS) Markers Anchored To The Diploid Fragaria Genome Sequence.
             Sargent, Lopez-Girona, Cabrera, Iezzoni, van der Knaap , Simpson, Crowhurst, Folta, Folkerts, and Shulaev

W252  Walnut Genome Analysis
             Dandekar, Dvorak, Luo, Aradhya, Velasco, Leslie, Uratsu, Britton, Reagan , and McGranahan

W253  A Genome Platform For Chestnut
             Sederoff, Wheeler, Carlson, Barakat, Powell, Baier, Kubisiak, Sisco, Hebard, Anagnostakis, Tomkins, Abbott, Staton, Smith, Nielsen, and Ficklin

W254  Mango Genomics
             Holton, Innes, Devitt, Karan, Dillon, Sheikh-Jabbari, Smyth, Bally, and Dietzgen

W255  LD Estimation And Analysis Of Diversity In Apple
             Micheletti, Troggio, Baldi, Costa, Pindo, Komjanc, Malnoy, Zarkikh, Magnago, Velasco, and Salvi

W256  Development Of Molecular Markers For Fire Blight Resistance (Erwinia amylovora) In Malus (Apple) By A Candidate Gene Approach
             Norelli, Gardiner, Malnoy, Aldwinckle, Baldo, Bassett, Bowatte , Borejsza-Wysocka, Bus, Fazio, and Wisniewski

W257  Increased Effictivity Of Mapping In Octoploid Strawberry Through Quantitative Interpretation Of SSR Data.
             Van Dijk, Dubos, Noordijk, Pikunova, Yilmaz-Temel, and Van de Weg

W258  Development Of Genome And Transcriptome Sequence Resources In European Hazelnut.
             Fox, Rowley, Priest, Bryant, Liston, Harper, Moon, Haudenschild, Fellis, Mehlenbacher, Hilles, and Mockler

W259  Candidate Gene Mapping And QTL Analysis Involved In Agronomical And Fruit Quality Traits In Prunus Species In The European Integrated Project ISAFRUIT
             Dirlewanger, Cardinet, Renaud, Le Dantec , Deborde, Maucourt, Moing, Croset, Lambert, Poëssel, Ruiz, Quilot, Audergon, Gouble, Bureau, Reich, Reling, Dondini, Tartarini, Illa, Howad, and Arus

W260  QTL Localization, Characterization And Candidate Gene Discovery For Genes Controlling Dormancy, Chilling Requirement, Bloom Time, And Heat Requirement In Prunus Species.
             Fan, Olukolu, Bielenberg, Holland, Zhebentyayeva, Okie, Reighard, and Abbott

Workshop: Functional Genomics

W262  ^Future Developments For Non Destructive 3D Plant And Root Imaging
             Vandenhirtz, Eberius, Jung, Koch, Specht, Vandenhirtz, and van der Hejden

W263  Pss1 Confers Nonhost Resistance Of Arabidopsis thaliana Against Two Soybean Pathogens, Phytophthora sojae.And Fusarium virguliforme.
             Brar, Swaminathan , and Bhattacharyya

W265  Transcriptome And Proteome Approach To Unveil Pierce’s Disease-Tolerance Genes In Grape
             Vasanthaiah, Basha, and Katam

W266  Diversity Genomics Across The Brassicaceae
             Hayward, McKenzie, Campbell, Tollenaere, Duran, Berkman, Edwards, Wu, Liu, Wang, Redden, Raman, and Batley

Workshop: Fungal Genomics

W268  Structural And Functional Genomics Of Oomycete And Fungal Infection
             Tyler, Tripathy, Kale, Dou, Capelluto, Wang, Han, Gu, Anderson, Fereira, Arredondo, Hanlon, Wang, Yu, Liu, Yao, Chen, Ye, Dong, Zhang, Zheng, Fudal, Rouxel, Lawrence, Shan, McDowell, and Wang

W269  Puccinia graminis Genomics: Variation Is The Rule
             Szabo, Sakthikumar, Grabherr, Mauceli, Chen, Zeng, and Cuomo

W270  Gene Expression In The Mutualistic Plant Pathogen, Epichloeuml festucae
             Schardl, Hesse, Mann, Arnaoudova, Khan, Jaromczyk, and Roe

W271  Using A Combined Chip-Chip And Expression Profiling Approach To Understand The Molecular Underpinnings Of Microbial-Host Associations
             Mitchell

W272  Genome Of Mining Of Secondary Metabolites From Aspergillus
             Wang

W273  Fungal Genomics At Beijing Genomics Institute
             Qin, Xu, Lin, Li, and Wang

Workshop: Gene Expression Analysis

W275  Cell Type-Specific Analysis Of The Translatome, And Of The Transcriptome At The Level Of The Single Cell
             Galbraith, Mustroph, Zanetti, Lambert , Janda, Jang, Holtan, Repetti, Girke , and Bailey-Serres

W276  The Transcriptional Map Of Wheat Chromosome 3B
             Rustenholz, Choulet, Hedley, Laugier, Waugh, Feuillet, and Paux

W277  de-novo Assembly Of Mangrove Transcriptomes - Traces Of Adaptations To An Extreme Lifestyle
             Dassanayake, Haas, Bohnert, and Cheeseman

W279  Performance Comparison Between Affymetrix Cartridge, Plate, And Strip Array Formats
             Clark, Chen, Schweitzer, and Keefe

Workshop: Genomics for Plant Disease Resistance

W281  Hunt For Effector Genes In Puccinia graminis
             Szabo, Tsuda, Tsuda, Grindle, Glazebrook, Katagiri, Sakthikumar, and Cuomo

W282  Understanding The Genetic Architecture Of Broad-Spectrum Disease Resistance Through Genome Scans Of Rice Mutants
             Leung, Ayliffe, Kang, Wang, Jin, Steffenson, and Leach

W283  Exploring New Rust Resistance Sources In Wheat By Knocking Out Suppressors
             Campbell, Talbert, Giroux, and Huang

W284  Blocking Entry Of Rust Effectors Into Host Cells
             Tyler, Kale, Gu, Capelluto, Dou, Arredondo, Fudal, Rouxel, Lawrence, and Shan

W285  Analysis Of Haustorial Transcripts Of The Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici
             Yin, Chen, Kang, and Hulbert

W286  Genetical Genomics Of Ug99 Stem Rust Infection Identifies Master Regulators Of Defense In Barley
             Moscou, Lauter, Steffenson, and Wise

Workshop: Genomics of Plant Development and Signal Networks

W288  Genetic Architecture Of Circadian Clock Function In Brassica rapa.
             Xie, Lou, Xu, Edwards, Weinig, and McClung

W289  Dissecting The Genetic Architecture Of Maize Leaf via Nested Association Mapping
             Tian, Bradbury, Flint-Garcia, McMullen, Holland, and Buckler

W290  Systems Biology Of Drought Stress Response In Plants
             Krishnan, Harb, Ambavaram, Batlang, Loganathan, Crasta, Lin, Wittich, and Pereira

W291  Regulation Of Flowering Initiation In Wheat
             Li, Distelfeld, and Dubcovsky

Workshop: Genomics-Assisted Breeding

W293  Development And Application Of A SNP-Chip Based Molecular Breeding Platform In Maize
             Xu, and Lu

W294  Genome-Wide Scan For Loci Affecting Iron Deficiency Chlorosis Tolerance In Soybean
             Chikara, Mamidi, Goos, Hyten, Cregan, and McClean

W295  Genomics Assisted Breeding In Potato: Know Your Alleles!
             Visser, Wolters, D’hoop, Uitdenwilligen, and van Eck

W296  Genomics-Assisted Breeding In US Public Wheat Breeding Programs
             Dubcovsky

W297  Potential And Practicality Of Genomewide Selection In Plants
             Bernardo

W298  Improving Crop Productivity: Translational Research For Sustainable Agriculture
             Heard

Workshop: Host-Microbe Interaction

W300  Manipulating Innate Immunity As An Anti-Infective Strategy
             Hancock

W301  Porcine Immunity To Infectious Disease
             Murtaugh

W302  Signatures Of Adaptation To Obligate Biotrophy In The Hyaloperonospora arabidopsidis Genome
             McDowell

W303  How Oomycete And Fungal Effectors Enter Plant And Animal Cells
             Tyler, Kale, Gu, Capelluto, Dou, Arredondo, Fudal, Rouxel, Lawrence, and Shan

Workshop: Intl. Consortium for Sugarcane Biotech.

W305  Diversity Arrays Technology (DArT) And Statistical Tools For Genome Profile-Based Molecular Breeding Of Sugarcane
             Heller-Uszynska, Uszynski, Evers, Huttner , Carlig, Caig, Detering, Aitken, Jackson , Hermann, Cox, D’Hontlique, Butterfield, Glaszmann, and Kilian

W306  Development And Application Of Microsatellite Markers For Linkage Mapping And Genomic Analysis Of Sugarcane
             Chen, James, Arcinas, Nagai, Yu, and Ming

W307  Inference Of Subgenomic Origin In The Genome Of Sugarcane Cultivar By Species-Specific Overgo Hybridizations
             Kim, Robertson, and Paterson

W308  The SPS Gene Family In Sugarcane
             McIntyre, Cordeiro, Goode, Bundock, Eliot, and Aitken

W309  miRNA Regulation During Biotic And Abiotic Stress In Sugarcane
             Rojas, Thiebaut, Almeida, Chabregas, Guimarães, Vicentini, Hemerly, and Ferreira

W310  The Role Of Beneficial Nitrogen-Fixing Endophytic Bacteria In Sugarcane Growth And Development
             Carvalho, Junqueira, de Figueiredo, Ferreira, Castro, Bonfim, Nogueira, Ferreira, Baldani, and Hemerly

W311  Tissue-Specific Promoters For Sugarcane: The SASRI Experience
             Potier

W312  PHB Production In Plant Peroxisomes
             Tilbrook, Poirier, McQualter, Gnanasambandam, Schenk, and Brumbley

W313  Increasing Production Of Polyhydroxybutyrate In Sugarcane Plastids
             Brumbley, Petrasovits, McQualter, Zhao, Dal’Molin, Snell, and Nielsen

Workshop: Intl. Cotton Genome Initiative

W315  Progress On Upland Cotton Sequencing
             Yu

W316  Detection Of Homoeologous Recombinants From Cotton EST Assemblies
             Salmon, Flagel, Udall, and Wendel

W317  Comparative Next-Generation Sequencing For Transcriptome Definition And SNP Development In Gossypium hirsutum
             Van Deynze, Matvienko, Kozik, Manchali, Wang, Yang, Jones, Chen, Town, Cheung, and Stelly

W318  Rapid And Dynamic Changes In Mirna And siRNA Sequence And Expression During Ovule And Fiber Development In Allotetraploid Cotton (Gossypium hirsutum L.)
             Chen, Pang, Woodward, Agarwal, Guan, Ha, Ramachandran, Chen, Triplett, and Stelly

W319  Analysis Of Gossypol Biosynthesis Pathway By Digital Gene Expression Tag Profiles
             Xiao-Ya, Chang-Qing, Ling-Jian, Ying-Bo, and Xiu-Ming

Workshop: Intl. Grape Genome Project

W320  Genome-wide SNP data refine relationships in the grapevine
             Myles

W321  RNA-Seq analysis of berry development in Vitis vinifera
             DelleDonne

W322  Development Of Muscadine Grape Leaf Proteome To Identify Proteins Associated With Value-Added Characteristics In Grape
             Katam, and Basha

W323  A gene expression map of Vitis vinifera cv. Corvina development
             Pezzotti

W324  Novel Graph Theoretic Approaches For Comparative Transcriptomics Of Vitis
             Schlauch, Fennell, Levy, Sreekantan, and Mathiason

Workshop: Intl. Grass Genome Initiative

W326  Comparative Analysis Of The Brachypodium distachyon Genome.
             Bevan, Febrer, Wright, Yang, McKenzie, Haberer, Gundlach, Spannagl, Schulman, Wicker, Salse, McCombie, Kersey, Birney, and Mayer

W328  The Foxtail Millet Genome And Its Relationship Amongst The Grasses
             Mitros, Bennetzen, Schmutz, and Rokhsar

W329  Expansion And Divergence Of The Prolamin Gene Family In Different Subfamilies Of The Grasses
             Xu, and Messing

W330  15 Million Years Of Rapid Genome Evolution In The Genus Oryza: A Glance Through A Genus-Wide Orthologous Vertical Dataset
             jetty, LU, SANYAL, YU, SONG, JIANG, PONTAROLI, RAMBO, CURRIE, COLLURA, TALAG, FAN, GOICOECHEA, ZUCCOLO, BENNETZEN, CHEN, SCOTT, and WING

W331  Surveying And Characterizing Genomic Repeats And Small RNA Production In Miscanthus X Giganteus
             Hudson, Swaminathan, Alabady, Varala, Ming, Chen, Rokhsar, and Moose

Workshop: Intl. Lolium Genome Initiative

W333  A Decade Of Temperate Pasture Plant Molecular Genetics – You’ve Come A Long Way, Baby
             Forster, Cogan, and Spangenberg

W334  Genetic Diversity And Population Structure Of Perennial Ryegrass Accessions Assessed By Simple Sequence Repeat (SSR) Markers
             Jiang, Bai, Liu, Wang, Warnke , and Yu

W335  Intron-Flanking EST Markers Using Rice Genomic Information For The Breeding Program Of Lolium/Festuca Complex
             Yamada, Tamura, Yonemaru, Komatsu, Tase, and Sanada

W336  Marker-Assisted Breeding To Improve Forage Quality And Disease Resistance In Tall Fescue
             Saha, Kirigwi, Pfender, and Hopkins

W337  High-Throughput SNP Discovery And Genetic Mapping In Perennial Ryegrass
             Asp, Studer, and Lübberstedt

W338  Forward Thinking For Forage And Turf Molecular Genetics
             Warnke, and Barker

Workshop: Intl. Triticeae Mapping Initiative

W340  The Life And Science Of Prof Mike Gale FRS
             Snape

W341  Pathogen Exploitation Of Gene-For-Gene Resistance Mechanisms In The Wheat-Stagonospora nodorum Pathosystem
             Faris, Zhang, Lu, Lu, Reddy, Cloutier, Fellers, Meinhardt, Rasmussen, Xu, Simons, and Friesen

W342  Is Natural Evolution Providing Enough Diversity For Wheat Resistance Breeding?
             Keller

W343  Whole Genome Physical Map Of Barley (Hordeum vulgare L.)
             Schulte, Ariyadasa, Poursarebani, Zhou, Sretenovic-Rajicic, Langridge, Shi, Mayer, Close, Weise, Scholz, Graner, and Stein

W344  The Kinase-Start Domain Gene Yr36 Confers Partial Resistance To Stripe Rust
             Dubcovsky, Cantu, Wu, Fu, Uauy, Distelfeld, Epstein, Ronald, and Fahima

W345  DNA Sequence Characterization Of A Gene-Rich Region In Rye
             Gustafson, and Ross

Workshop: Intl. Wheat Genome Sequencing Consortium

W347  An Update Of The European Effort In Developing Integrated Physical Maps Of Wheat Chromosomes From Groups 1 And 3
             FEUILLET

W348  Wheat Genome Analysis Using Illumina Paired Read Sequencing
             Berkman, McKenzie, Stiller, Duran, Imelfort, Eales, Marshall, Dolezel , Simkova, and Edwards

W349  Insertion Site-Based Polymorphism Markers Open New Perspectives For Genome Saturation In Hexaploid Wheat
             Paux

W350  Construction Of High-Resolution Radiation Hybrid Based Physical Maps For Large Plant Genomes
             Kianian, Riera-Lizarazu, Gu, Luo, Denton, Lazo, and Ghavami

W351  Mining The Allohexaploid Wheat Genome For Useful Sequence Polymorphisms
             Hall, Bevan, Brenchley, DAmore, Wright, McKenzie, Barker, Hall, and Edwards

W352  Towards An Integrated Physical And Genetic Map Of Chromosome 3A Of Wheat
             SEHGAL, Aknunov, Li, Kaur, Catana, Parimi, Faris, Reddy, Devos, Rabinowicz, Chan, Maiti, Dolezel, Simkova, Safar, Ma, Luo, and Gill

Workshop: IWGSC Physical Mapping Standards

W354  BAC Fingerprinting For Physical Map Construction
             Luo

W355  Fluorescent Based High-Information-Content Fingerprinting Protocol Improvement For Physical Mapping Of Wheat Chromosomes.
             Cattonaro, Magni, and Livon

Workshop: Large-Insert DNA Libraries and Their Applications

W357  Using A Minimum Tile Path For Gene Function Discovery By Plant Transformations Encompassing The Entire Soybean Genome
             Ullah, Jasim, and Lightfoot

W359  Preliminary Characterization Of A Random Shear BAC Library For Apricot Genome Analysis
             Dondini, Adami, Lain, Cattonaro, Chiozzotto, Geuna, Tartarini, Bassi, Testolin, Ye, Mead, and Wu

W360  Whole-Genome Shotgun Sequencing Of The Oil Palm And Jatropha Genomes
             Zieler, Richardson, Schwartz, Herrgard, Lomelin, Mathur, Cheah, Tee, Lee, Chua, Kwan, Miller, Koren, Chan, Maiti, Amedeo, Ferriera, Rogers, Sutton, Town, and Venter

W361  Functional Characterization Of A Meiotic Gene Complex On Wheat Chromosome 5B
             Rustgi, Kumar, and Gill

Workshop: Legumes

W363  Physical Mapping And Transcriptional Analysis Of Large Homoeologous Deletions In Soybean
             Stupar, Haun, Bolon, Vance, Muehlbauer, Naeve, and Orf

W364  Comparative Analysis Of A 1-Mb Region Of Phaseolus vulgaris To The Highly Duplicated Soybean Genome
             Lin, Stupar, Hans, Hyton, and Jackson

W365  Modulation Of Fatty Acid Composition Of Soybean Oil For Improved Functionality
             Clemente

W366  Application Of Biotechnology In Peanut Cultivar Improvement
             Chu, Holbrook, Faustinelli, Deng, Bhattacharya, Nagy, Knapp, and Ozias-Akins

W367  Identification Of Nutritional Stress-Responsive miRNAs In Phaseolus vulgaris
             Valde-Lopez, Graham, Yang, Reyes, Vance, and Hernandez

Workshop: Maize

W369  Sequencing The Maize Genome
             McCombie

W370  Transposable Element Distribution, Diversity And Evolution In The B73 Maize Genome
             Bennetzen, Baucom, Estill, Jogi, Upshaw, and Yang

W371  Analysis Of Maize Inbred B73 Centromeres 2 And 5 Reveals Dynamic Loci Shaped By Retrotransposons
             Presting, Wolfgruber , Sharma, Schneider , Albert , Koo , Shi, Gao, Han , Lee , Xu, Allison , Birchler , Jiang, and Dawe

Workshop: Molecular Markers for Plant Breeding

W373  Genetic Dissection Of Agronomic Performance Of Shanyou 63 Using An Extra-High Density SNP Map Based On Next Generation Sequencing
             Xie, Yu, Wang, Feng, Huang, Zhao, Xing, Yu, Han, and Zhang

W374  Development Of Molecular Marker For A MAS System In Pepper (Capcicum spp.) Breeding
             Lee, Yeon, Song, Kang, Kim, Park, Ahn, Yun, and Kim

W375  Development Of Molecular Markers And Breeding For Resistance To Wheat Stem Rust Race Ug99
             Mago, Dundas, Sambasivam, Spielmeyer, Bariana, Lagudah, and Ellis

W376  Identification Of Molecular Markers Associated With Low Chill/ Heat Tolerance In Raspberry
             Vasanthaiah, Kambiranda, Umar, Basha, Phills, and Hunter

Workshop: Mutation Screening

W379  Gene Targeting: Tool For Plant Gene Mutagenesis
             Zobell, Wendeler, and Reiss

W380  Whole Population Mutation Screening On A Single Microarray
             Geistlinger, and Fischer

W382  DNA Damage And Its Chromosomal Endpoints In Plants
             Schubert

W383  Rapid Evolution Of Intergenic Regions In Plants: A Rich Source Of Poly-Morphisms
             Wicker, Stein, Komatsuda, Buchmann, and Keller

Workshop: National Center for Biotechnology Information

W385  Discover Whats New At NCBI
             Pechous

W386  Managing Genome Assemblies
             Church, Schneider, Clausen, Chen, Bouk, Meric, Ananiev, Wagner, DiCuccio, Kimchi, Cohen, Kitts, Sherry, Maglott, Ostell, and Genome

W387  NCBI Genetic Variation Resources
             Phan

W388  Expanding Protein Cluster Database To Include Plants
             Vatsan, Badretdin, Chetvernin, Fedorov, Ghazal, Kiryutin, Klimke, Resenchuk, Smith-White, Tolstoy, and Tatusova

W389  Genome Sequencing Projects Annual Report
             Pruitt, Tatusova, Mizrachi, and Clark

W390  UniGene: A Resource For Plant And Animal Transcripts
             Wagner

Workshop: Non-Seed Plants

W392  Comparative Genomics Of Algae And The Evolution Of Developmental Complexity
             Prochnik, Umen, Miller, Hallmann, Nichii, Nedelcu, Fritz-Laylin, Schmutz, Grimwood, and Rokhsar

W393  Toward Functional And Comparative Genomics With The Liverwort, Marchantia polymorpha
             Kohchi, Ishizaki, Fukuzawa, and Yamato

W394  The Physcomitrella patens v2 Plant Reference Genome
             Rensing

W395  Genome-Wide Comparative Analysis Of Cytochrome P450 Superfamily In Selaginella Moellendorffii Reveals Large-Scale Parallel Diversifications Of Enzyme Functions
             Weng, Nelson, and Chapple

W396  Functional Genomics Of Fern Gametophytes: Transcriptome Sequencing Pteridium aquilinum
             Der, Barker, Wickett, dePamphilis, and Wolf

W397  Pteridophyte Evolutionary Genomics: Emerging Genome Resources For Seed-Free Vascular Plants
             Barker

W398  The Evolution Of WRKY Transcription Factors In The Green Lineage
             Rushton, Tripathi, Boken, Langum, Bokowiec, Sutton, Meyerink, Geraets, Lang, Chen, Shen, Timko, and Rensing

Workshop: NSF/USDA CSREES Microbial Genome Sequencing Program Awardees

W400  A Genome Sequence For The Apicomplexan Sarcocystis Neurona
             Howe, Schardl, and Kissinger

W404  Comparative Genomics Of Wheat Rust Fungi: Progress And Prospects
             Cuomo, Sakthikumar, Grabherr, Heiman, Mauceli, Chen, Young, Zeng, Birren, Bakkeren, Fellers, and Szabo

W405  Genome Sequence Of The Oomycete Aquaculture Pathogen Saprolegnia parasitica
             Tyler, van West, Tripathy, Diéguez-Uribeondo, Nusbaum, and Russ

W406  The Impacts Of Plant Species On Rhizosphere Microbial Communities: Lessons From Culture-Based Research And Next-Gen Sequencing
             Bradeen, Kinkel, Rosenzweig, Hanson, Lange, Garza, and Bakker

W407  Genomic Toolbox For Studying APEC Pathogenesis
             Tivendale, Mangiamele, and Nolan

Workshop: Oats

W409  Potential Impacts Of A New Oat Genomics Toolbox: Lessons From The Barley CAP
             Muehlbauer, CAP, and Consortia

W410  New Oat SSR Markers: A Turkish Delight
             Dumlupinar, Jellen, Anderson, Campbell, Wisniewski, Bonman, and Jackson

W411  SNPs Galore: A Bountiful Yield For The Oat Community And A Model For Sequence-Based SNP Discovery In A Complex Genome
             Lazo, Oliver, Tinker, Anderson, Jellen, Lutz, Rubenfield, and Jackson

W412  Evolution Of The Oat Genetic Road Map: From Tetraploid To Hexaploid
             Oliver, Kilian, Ladizinsky, Korol, Lazo, Jellen, Lutz, Tinker, Anderson, Dumlupinar, Wisniewski, Campbell, Shackelford, and Jackson

W413  Separating The Oat Subgenomes
             Fominaya, Jellen, Loarce, Sanz, Irigoyen, and Ferrer

Workshop: Organellar Genetics

W415  Genome-Wide Screen For Nuclear Genes Controlling Plastid Inheritance In Nicotiana sylvestris
             Maliga, Gurdon, Thyssen, and Maliga

W416  Engineering The Soybean Plastid Genome For Biotechnological Applications
             Dubald, and Pelissier

W417  Geraniaceae, A Natural Model System For Examining Plastid Genome Evolution
             Jansen

W418  Toward A Mechanistic Understanding Of The Roles Of Pentatricopeptide Repeat Proteins In Organellar Gene Expression
             Barkan, Pfalz, Prikryl, Rojas, and Williams-Carrier

W419  Using Genome Sequence Data To Predict The Structure And Function Of Pentatricopeptide Repeat (Ppr) Proteins
             Bond, Fujii, Stanley, and Small

Workshop: Plant Alien Introgression

W421  Introgression Of Resistance To Downy Mildew From Wild Progenitors Into Cultivated Lettuce
             Truco, Christopoulou, McHale, Wroblewski, Ochoa, and Michelmore

W422  Introgression Among Cultivars, Landraces, Species And Genera Will Continue The Green Revolution.
             WAINES

W423  Almond (Prunus ulcis) As A Source Of Genetic Variability For Peach (P. persica)
             Arús, Picañol, and Howad

W424  Variation From Wild Relatives And Progenitors In The CIMMYT Wheat Program
             Bonnett, Dreisigacker, Reynolds, Zaharieva, Manes, Singh, and Braun

W425  Glycine Soja Accessions And Glycine max Landraces – Gene Sources For Glycine max Elite Cultivars?
             Specht, Cregan, Hyten, and Chaky

Workshop: Plant Cytogenetics

W427  Live Imaging Of Chromosome Dynamics In Meiotic Prophase I In Maize.
             Sheehan, and Pawlowski

W428  Cytogenetics Of Meiotic Chromosomes In Maize
             Wang, Golubovskaya, Carlton, Pawlowski, and Cande

W429  Detection Of Interefering Co By Mlh1 Foci In Arabidopsis thaliana
             Chelysheva, Giraut, Grandont, Vrielynck, Leguin, Grelon, and Mezard

W430  Derepression Of RNA-Directed de novo DNA Methylation Upon Decondensation Of Centromeric Heterochromatin
             Schoft , Chumak, Mosiolek, Slusarz, and Tamaru

W431  Surprising Aneuploids: Lessons Learned From Arabidopsis
             Henry, Dilkes, and Comai

W432  Control Of Progression In Late Meiotic Prophase In Arabidopsis
             Andreuzza, Nishal, Marimuthu, and Siddiqi

Workshop: Plant Feedstock Genomics

W434  Translational Genomics For The Improvement Of Switchgrass
             McCann, Penning, Olek, and Carpita

W435  A Universal Genome Array And Transcriptome Profiling For Brachypodium distachyon.
             Fox, Priest, Bryant, Wilhelm, Michael, and Mockler

W436  Identification Of Genes That Regulate Phosphate Acquisition And Plant Performance During Arbuscular Mycorrhizal Symbiosis In Medicago truncatula And Brachypodium distachyon
             Gomez, Hong, Park, Hudson, and Harrison

W438  Methods For Characterizing The Developmental Epigenome Of Populus trichocarpa
             Strauss, Vining, Pomraning, Wilhelm, Dharmawardhana, Priest, Shevchenko, Ma, Zhu, Etherington, Mockler, and Freitag

Workshop: Plant Interactions with Pests and Pathogens

W440  Transcriptome Analysis Of Phakopsora pachyrhizi-Glycine max Interaction In Susceptible Plant Using Next Generation Sequencing
             Tremblay, Hosseini, Alkharouf, Li, Luster, and Matthews

W441  Verticillium Wilt In Potato: Host-Pathogen Interactions
             Jansky, and Halterman

W442  Defense Gene Expression Profiling Of A Wheat-Pseudomonas Biocontrol Interaction
             Okubara

W443  The Role Of Trichothecenes In The Triticeae-Fusarium graminearum Interaction
             Muehlbauer, Boddu, Gardiner, Shin, Jia, Cho, Kruger, Schweiger, Berthiller, Hametner, and Adam

W444  The Nematode Resistance Allele At The rhg1 Locus Alters The Proteome And Primary Metabolism Of Soybean Roots In NILs And Transgenic Plants
             Ali, Afzal, Natarajan, Iqbal, Geisler, El Shemy, Mungur, Willmitzer, Fiehn, Simmonds, Saini, and Lightfoot

W445  Parts List But No Instructions: Assembling The Complex Biology Of Rice Blast Disease
             Dean

Workshop: Plant Metabolic Pathway Regulation

W447  Hunting Of Transcription Factors That Regulate Metabolic Pathways
             Nakata, Iwase, Matsui, Mitsuda, and Ohme-Takagi

W448  Altering The High-Order Structure Of Cellulose via Modification Of Cellulose Synthase
             DeBolt

W449  RediscoveryDB: A Toolkit To Discover Shared Molecular Mechanisms For A Large Number Of Genes And Metabolites
             Lin, Schaal, Boveda, and Lu

Workshop: Plant Phenotypes

W451  Rice Phenotype Information In Oryzabase
             Yamazaki

W452  Plant Phenotype Data At TAIR - Present And Future
             Huala

W453  Plant Trait Ontologies: A Legume Perspective
             Nelson

W454  Crop Ontology: A Reference Controlled Vocabulary On Crop Trait Information
             Shrestha, Senger , Mauleon , Davenport, and Arnaud

W455  Future Developments For Non Destructive 3D Plant And Root Imaging
             Eberius, Jung, Koch, Specht, Vandenhirtz, Vanderhirtz, and van der Heijden

W456  The Phenotype Database At The SOL Genomics Network (solgenomics.net)
             Mueller, Tecle, Bambarely, Buels, and Menda

Workshop: Plant Reproduction Genomics

W458  Evolution Of The Regulatory Network For Flower Development
             Kong

W459  Organ Identity And Elaboration In The Evolution Of Floral Morphologies In Thalictrum, A Non-Core Eudicot.
             Di Stilio

W460  PASSIOMA: Using Genomic Tools To Unravel The Molecular Basis Of Flower Development And Evolution In Passionflowers
             Dornelas

W461  Evolution Of Floral Development Genes And Gene Families In Basal Angiosperms
             Wickett, Zhang, Jiao, Ayyampalayam, Chanderbali, Wall, Liang, Landherr Scheaffer, Ralph, Schuster, Ma, Soltis, Soltis, Clifton, Carlson, Leebens-Mack, and dePamphilis

W462  Identification Of Key Regulators For Flowering Time Regulation In A Biennial Crop
             Müller, Zhang, Büttner, Schulze-Buxloh, Abou-Elwafa, Vogt, Chia, Mutasa-Göttgens, and Jung

Workshop: Plant Transgene Genetics

W464  Agrobacterium-Mediated Transformation From T-DNA Minicircles Prevents Integration Of Vector Backbone Sequences
             Conner, Pringle, Lokerse, Barrell, and Jacobs

W465  Biotechnology Tools For Agrobacterium-Mediated Transformation Of Rice With All-Native DNA Constructs.
             Thilmony, and Cook

W466  Improving Crops Without Incorporating Unknown Or Foreign DNA Into Their Genomes
             Rommens, Hanley, Balestrazzi, Belknap, and Swords

W467  Dosage Dependent Gene Expression From Multi-Copy Locus In Transgenic Rice
             Akbudak, More, Nandy, and Srivastava

W468  Expression Of Recombinant Proteins In Soybean Seeds Under Control Of Legumes Storage Proteins Regulatory Sequences
             Cunha, Matsunaga, Oliveira, Lima, Murad, Araujo, Aragao, Brigido, Lacorte, Waters, Fontes , da Silva, Souza, OKeefe, Saucedo, Lewis, Old, Simpson, Ritter, Caballero, Bloch, Vianna, and Rech

Workshop: Polyploidy

W470  Genomic Approaches Reveal That Tissue-Specific Silencing Of Duplicated Genes Occurs During Early Generations After Genome Duplication In Natural Populations Of The Recently Formed Allopolyploid Tragopogon miscellus
             Buggs, Zhang, Miles, Tate, Gao, Schnable, Barbazuk, Soltis, and Soltis

W471  Patterns Of Gene Loss In The Natural Allopolyploid Arabidopsis Suecica
             Digiuni, Ngo, Missirian, Dilkes, and Comai

W472  The Fate Of Doubled Gene Complements: Universals And Peculiarities Across The Eukaryotes
             Zheng, and Sankoff

W473  Paleopolyploidy And Hybridizations In Mosses
             Rensing

W474  Paleopolyploidy From A Viewpoint Of The First Physical Map Of Brassica oleracea
             Wang, Torres, Pierce, Lemke, Nelson, Bowers, Xiao, Lin, Pires, Town, and Paterson

W475  Tracking The History Of Genome Duplications In Flowering Plants: Evidence From Global Gene Family Phylogenies
             Jiao, Zhou, Wall, Wickett, Ma, dePamphilis, Bowers, and Leebens-Mack

Workshop: Population and Conservation Genomics

W477  How Native Becomes Invasive: Ecological Genomics Of Species Invasions In Yellow Starthistle
             Dlugosch, Barker, Lai, and Rieseberg

W478  Outlier Locus Detection In Species At Risk: Applications To Conservation
             Russello, and Kirk

W479  Admixture Zones: Genomic “Melting Pots” For Identifying Fitness-Related Variation
             Lexer, Heinze, Joseph, de Carvalho, Fussi, Barbará, van Loo, Ingvarsson, and Buerkle

W480  Following The Signature Of Selection In The Parallel Independent Domestication Events Of Phaseolus vulgaris In The Andes And In Mesoamerica
             Rossi, Bitocchi, Bellucci, Desiderio, Nanni , Attene, and Papa

W481  Genomic Signatures Of Selection In Red Spruce Populations Affected By Anthropogenic Sulfate Depositions
             Bashalkhanov, and Rajora

W482  Association Genetics: Methods Comparison And Caveats Associated With Natural Populations Sampling
             Ingvarsson, Ismail, and El-Kassaby

W483  Iterative DNA Sequencing On Microarrays: A Nextgen Biotechnology For Ecological, Conservation, And Evolutionary Mitogenomics
             Carr

Workshop: Poultry

W487  Global Variation In Copy Number In The Chicken Genome
             Crooijmans, Fife, Fizgerald, Schmidt, Kaiser, Redon, and Groenen

W488  Web-Based Tools For Next-Gen Sequencing Analysis
             Brown

W491  The Reactome Model For Avian Pathway Databases
             DEustachio, Jin, Croft, and Schmidt

W492  Genetic Analysis Of Pulmonary Hypertension And Ascites In The Chicken
             Al-Rubaye, Kirshnamoorthy, Anthony, Erf, Wideman, and Rhoads

W493  Implementation Of Genomic Selection In Egg Layer Chickens
             Dekkers, Stricker, Fernando, Garrick, Lamont, OSullivan, Fulton, Arango, Settar, Kranis, McKay, Koerhuis, and Preisinger

W494  Haplotype Block Structure In An Elite Commercial White Leghorn Layer Chicken Line
             Fulton, Soller, Arango, OSulliivan, and Lipkin

W495  Avian Sperm Cryopreservation: Shifting The Paradigm From Empirical Approaches To Physiological Solutions
             Long

W496  Evidence Of 2 Rounds Of Vertebrate Genome Doubling Hypothesis: Novel Gene Characterization Of GHRH, PRL, GCG & Their Receptor Gene Families In The Chicken Genome
             Wang, Li, Kwok, and Leung

W497  Pleiotropic Effects Of QTL On Multiple Production Traits In An Advanced Generation Intercross Of Two Elite Commercial Leghorn Layer Lines: Implications For MAS And WGS
             Fulton, Lipkin, Settar, Arango, Osullivan, and Soller

Workshop: Protein Information Resource

W499  Application Of Text-Mining Tools To Pathway Annotation
             DEustachio

Workshop: Proteomics

W501  Proteomics Enables Functional Genomics And Genome Annotation
             Briggs, Shen, van Schie, Dangl, Castellana, and Bafna

W502  Distinct Changes In Soybean Xylem Sap Proteome In Response To Pathogenic And Symbiotic Microbe Interactions
             Subramanian, Cho, Keyes, and Yu

W503  Quantitative Phosphoproteomics Of Medicago truncatula Roots Provides Insight Into in vivo Kinase Activity And Symbiosis Signaling In Legumes
             Grimsrud, den Os, Wenger, Swaney, Schwartz, Yeun, Sussman, Ané, and Coon

W504  Cilium Adhesins Of Mycoplasma hyopneumoniae
             Padula, Kuit, Wilton, Jenkins, Seymour, Deutscher, Bogema, Minion, Cordwell, Crossett, Falconer, Djordjevic, Walker, and Djordjevic

W505  Label-Free Quantitative Proteomics Of Chlamydomonas reinhardtii
             Loo

W506  Phosphoproteomic Analysis Of Human Embryonic Stem Cells
             Brill, Xiong, Lee, Ficarro, Crain, Xue, Terskikh, Snyder, and Ding

Workshop: QTL Cloning

W509  Map-Based Cloning In Bread Wheat Of A Ortho-Meta QTL Conserved With Rice, Maize And Sorghum
             Salse

W510  A Novel Photoperiod Sensitivity QTL, HD16, Conferring Adaptability To Wide Cultivation Area In Rice
             Hori, Matsubara, Ogiso, Yamanouchi, and Yano

W511  Cloning Of Rice Genes Underlying Broad-Spectrum Disease Resistance QTLs
             Wang

W512  eQTL Analysis Of Partial Resistance To Puccinnia hordei Otth In Barley
             Chen, Hackett, Niks, Hedley, Druka, Marcel, and Waugh

Workshop: Recombination

W514  The Rad51 Function : An Evo/Reco Approach In Arabidopsis
             Delacote, Massot, Shaefer , Guiderdoni, Nogue, and Doutriaux MP

W515  RecQ-Helicases And The BTB (RTR) Complex Of Arabidopsis thaliana In Homologous Recombination.
             Hartung, and Puchta

W516  Two Types Of Meiotic Crossovers Coexist In Maize
             Falque, Anderson, Stack, Gauthier, and Martin

W517  Suppressing Meiotic Crossovers For Reverse Breeding Strategies
             Wijnker, Dirks, van Dun, de Snoo, Lelivelt, and de Jong

W518  Investigating Factors Controlling Meiotic Recombination In Maize.
             Pawlowski, Sidhu, and Retzel

W519  Exzact Precision Technology Induces Homology-Directed Repair In Plant Genomes
             Shukla

Workshop: Rice Blast

W521  Understanding The Molecular Mechanisms Of The Instability Of Rice Blast Resistance
             Jia

Workshop: Rice Functional and Comparative Genomics

W523  Genetic Isolation, Divergence And Gene Flow In O. sativa
             McCouch, Tung, Wright, Zhao, Ali, Kovach, Jiang, Sweeney, Kimball, Tyagi, Imai, Kim, Reynolds, Eizenga, McClung, and Bustamante

W524  Re-Sequencing Of Hundreds Of Chinese Rice Landraces To Discover The Genome Diversity Of Rice Germplasms
             Huang, Lu, Feng, Zhao, Zhao, Li, Liu, Wei, Qian, Jiayang , Zhang, Sang, and Han

W525  The Ethylene Response Factors Snorkel1 And Snorkel2 Allow Rice To Adapt To Deepwater
             Ashikari

W526  Fine Definition Of The Pedigree Haplotypes Based On A High-Throughput Genome-Wide SNPs Typing In Rice
             Yamamoto, Yonemaru, Nagasaki, Ebana, Nakajima, Shibaya, and Yano

W527  The Epigenetic Landscape Of Rice
             Chodavarapu, Feng, Meyers, Wank, Jacobsen, and Pellegrini

W528  RiceGE: The Rice Functional Genomics Database
             Chen, and Ecker

W529  RiceArrayNet: A Database For Correlating Gene Expression From Transcriptome Profiling, And Its Application To The Analysis Of Coexpressed Genes In Rice
             Nahm, Kim, and Lee

Workshop: Root Genomics

W531  Abiotic Stress Tolerance And Altered Root Phenotypes
             Harb, Dixit, Karaba, Aharoni, Krishnan, Ambavaram, Batlang, and Pereira

W532  Exploring The Root Clock As A Molecular Mechanism For Periodic Lateral Root Formation
             Van Norman, Moreno-Risueno, and Benfey

W533  Future Developments For Non Destructive 3D Plant And Root Imaging
             Vandenhirtz, Eberius, Jung, Koch, Specht, Vandenhirtz, and van der Hejden

W534  Exploring Regulatory Elements Involved In Root Development And Abiotic Stresses
             Maia, Farias, Ahlert, Bervald, Vital, Almeida, and Costa de Oliveira

W536  Auxin Signaling In Grasses Root Development Promoted By Endophytic Diazotrophic Bacteria
             Carvalho, Junqueira, Figueiredo, Ferreira, Castro, Bonfim, Nogueira, Vicentini, Ferreira, Baldani , and Hemerly

Workshop: Sequencing of Complex Genomes

W538  The Sugarcane Genome Sequencing Effort: An Overview Of The Strategy, Goals And Existing Data
             Souza, Ming, Henry, DHont, Potier, and Paterson

W542  Cassava Genome Sequencing
             Rounsley, Prochnik, Barry, Kodira, Mohiuddin, Fauquet, Rodriguez, Tohme, Rabinowicz, Harkins, and Rokhsar

Workshop: Sex Chromosomes and Sex Determination

W544  Sex Determination In Cucurbits : Genetic And Epigenetic Implications
             Martin, Troadec, Boualem, Rajab, Fernandez, Morin, Pitrat, Dogimont, and Bendahmane

W545  One Billion Years Of Genome Evolution At The Fungal Mating Type Locus
             Crouch, Vaillancourt, Hillman, and Szabo

W546  Sex Chromosomes And The Sex-Determining Loci In The Genus Salmo
             Davidson, Li, Lubieniecki, and Phillips

W547  Sex Chromosome Dosage Compensation In Birds
             Arnold

W548  Functional Genomics Of The Bovine Y-Chromosome
             Liu, Ti-Cheng, Yang, Yasue, Crow, and Retzel

W549  The Role Of Y Chromosome And PAR Genes In Male And Female Fertility In Horses
             Raudsepp, Paria, and Chowdhary

Workshop: Small RNA

W551  Genetics Of de novo Methylation In Arabidopsis
             Greenberg, Ausin, and Jacobsen

W552  Characterization Of Avian miRNAs: Expression Analysis And Target Gene Identification
             Liu, Hicks, and Trakooljul

W553  Tissue-Specific Inhibition Of The Flavonoid Pathway By Endogenous Chalcone Synthase siRNAs In Glycine max
             Lila, Tuteja, Zabala, Varala, and Hudson

W554  Rice Small RNAs Associated With Development And Environmental Stress
             Green, Jeong, Zhai, Park, De Paoli, Accerbi, Lu, Gurazada, Dorantes-Acosta, Pillay, Jorgensen, Mahalingam, and Meyers

W556  High-Throughput Sequencing And Analysis Of Small Non-Coding RNAs In Human And Non-Human Primate IPSC Lines
             Nathanson, Carromeu, Marchetto, Brennand, Liang, Gage, Muotri, and Yeo

Workshop: Solanaceae

W558  The Potato Genome Sequence
             Genome Sequencing Consortium

W559  Use Of High Resolution Melting Analysis (HRM) For SNP Marker Development In Capsicum spp.
             Kang, and Sungwoo

W560  The History Of Eggplant Domestication: Phylogeographic Relationships Among Candidate Progenitors And Asian Heirloom Varieties
             Litt, Meyer, and Nee

W561  SNP Development For Elite Potato And Tomato Germplasm
             Douches, Francis, Van Deynze, Hamilton, De Jong, Mueller, and Buell

W562  Emerging Genetics And Genomics In Exotic Andean Solanaceous Species
             Barrero

W563  The Emerging Tomato Genome Sequence
             van Ham, and Sequencing Consortium (SOL)

Workshop: Somatic Genome

W565  Introduction To Somatic Genome Instability, Variation, Engineering And Evolution Workshop
             Li

W566  Somagenetic Variation And Its Chromosomal And Molecular Bases
             Li

W567  Environmentally Induced Adaptive Variation In Flax
             Cullis

W568  Somatic Instability And Recombination In Single And Double Mutants Of DNA Mismatch Repair Genes In Arabidopsis thaliana.
             Li, Azaiez, Alou, Jean, and Belzile

W569  Targeted Mutagenesis In Plant Cells Induced By Zinc-Finger Nucleases
             Shukla

W570  Induction Of Cytoplasmic Genetic Variation In Higher Plants By The Disruption Of Mitochondrial Genome Stability
             Xu, Arrieta-Montiel, Shedge, Wamboldt, de Paula, and Mackenzie

W571  Tight Regulation Of Large-Scale Somatic Rearrangement In A Vertebrate Genome
             Smith, Francesca, Eichler, and Amemiya

Workshop: Sorghum and Millets

W573  Genome-Enabled Development Of Bioenergy Traits In Sorghum
             Vermerris

W574  Assessment Of Genetic Diversity And Population Structure Of Sweet Sorghum Accessions In The U.S. Germplasm Collection
             Wang, Zhu, Barkley, Chen, Erpelding, Pederson, and Yu

W575  Sorghum Proteome Analysis And Effects Of Hyperosmotic Stress Treatments
             Ngara, Thomas, and Ndimba

W576  Millets: Potential Genetic Resource For Improving Drought Tolerance And Water Use Efficiency In Crops
             Hu, Lin, Meng, and Chai

W577  Transcriptome Profiling In Sorghum Using Next Generation Sequencing
             Klein, Toups-Dugas, Ware, and Klein

W578  Unraveling Whole Genome By de novo Short-Read Assembly And Resequencing
             Xu, Guo, Ni, Yang, Huang, and Li

Workshop: Soybean Genomics

W582  Proteomic Analysis Of Soybean Root Hairs Colonized By Bradyrhizobium japonicum
             Brechenmacher, Hixson, Nguyen, Libault, Lowery, Mooney, Pasa-Tolic, and Stacey

W583  What Are The Genes Required To Make A Soybean Seed?
             Kawashima, Cheng, Wagmaister, Bui, Hur, Le, Chen, Danzer, Li, Wang, Somers, Harada, and Goldberg

W584  Endogenous Small RNA Populations In Soybean Including Tissue-Specific siRNAs That Down-Regulate The Chalcone Synthase Gene Family
             Vodkin, Zabala, Campos, Jones, Tuteja, Radwan, Calla, Clough, Win, Varala, and Hudson

W585  Transposon Tagging And Fast Neutron Mutagenesis In Soybean
             Hancock, Chesser, Clemente, Stacey, Vance, Zhang, and Parrott

Workshop: Statistical Genomics

W587  Regulatory Divergence In Drosophila melanogaster And D. simulans, A Genome-Wide Analysis Of Allele-Specific Expression
             Graze, McIntyre, Main, Wayne, and Nuzhdin

W588  Statistical Methods To Control For Population Structure And Relative Kinship In Association Mapping With Different Sample Types
             Yu, and Zhu

W590  An Efficient Approach To Simultaneous Genome-Wide Association Study
             Zhang, Lin, Wang, Pungpapong, Fleet, and Zhang

W591  A Statistical Model For Genetic Mapping Of Biological Shape
             Wu, Fu, and Berg

W592  QTL Mapping And Inference Of Networks
             Ritland

Workshop: Sugar Beet

W594  Mining Table Beet For Betalain Pathway Genes.
             Hatlestad, Sunnedeniya, Akhavan, Gonzalez, and Lloyd

W595  Germination Under Stress: A Marker For Inherent Vigor Or An Isolated Event?
             Naegele, and McGrath

W596  New Research Program At The Sugarbeet Research Unit (USDA-ARS, FT. Collins) Focusing On Addressing Plant-Pathogen Interactions
             Webb

W597  SNP Discovery via Genomic Reduction, Barcoding And 454-Pyrosequencing In Amaranth
             Maughan, Yourstone, Jellen, Ladle, and Udall

W598  DArT Markers For Sugarbeet Association Analysis And Genetic Mapping Of Beet Curly Top
             Eujayl, Simko, Strausbaugh, and Kilian

Workshop: Sugarcane Genome Sequencing Initiative

W600  Sequencing Approaches For Sugarcane Promoter Identification And Database Development
             Hotta, Vicente, Nishiyama-Jr, and Souza

W601  Genome Survey Sequences Of Sugarcane Species
             Swaminathan, Chen, Smith, James, Rokhsar, Hudson, Moose, and Ming

W602  Genome Sequencing For Marker Discovery In Sugarcane
             Henry, Bundock, Aitken, and Casu

W603  Assemble The Sugarcane Genome, The Use R570 BACs As A Start.
             Van Sluys, Rossi, Cruz, Ochoa, de Setta, Abrantes, Domingues, and Scortecci

W604  Comparison Of Seven Homoeologous Haplotypes (BAC) Within The High Polyploid Sugarcane Genome
             Charron, Garsmeur, Jouffe, Bocs, Samain, Couloux, Droc, Glaszmann, Van Sluys, and DHont

W605  Towards Sequence Complex Plant Genomes With Next Generation Sequencing Technology
             Li, Yang, Xu, Huang, and Wang

Workshop: Swine Genome Sequencing

W609  The Porcine HapMap Project: Genome-Wide Assessment Of Nucleotide Diversity, Haplotype Diversity And Footprints Of Selection In The Pig
             Groenen, Amaral, Megens, Larson, Archibald, Muir, Malhi, Crooijmans, Ferretti, Perez-Encizo, and Schook

W610  Developing Predictive Models For Identifying Pigs With Superior Immune Response And Improved Food Safety
             Tuggle, Uthe, Christian, Couture, Demirkale, Nettleton, Honavar, Lunney, and Bearson

W612  Chondrocyte Gene And Protein Expression In A Porcine Osteoarthritis Model – Early Detection Of Tissue Degenerative Factors
             Ashwell, McCulloch, Lascelles, ONan, and Mente

W613  Genome-Wide Linkage Analysis Of Gene Expression Of Loin Muscle Tissue Identifies Candidate Genes In Pigs
             Steibel, Rosa, Tempelman, Bates, Rilington, Ragavendran, Raney, Ramos, Cardoso, Edwards, and Ernst

W614  Applications Of New Porcine Genomic Tools To Trait Discovery And Understanding Genomic Architecture
             Rothschild, Gorbach, Fan, Onteru, Du, Garrick, Fernando, Stalder, and Dekkers

Workshop: Swine

W616  Summary Report Of The Pig Genome Project
             Churcher

W618  Annotation Of The Pig Genome
             Archibald, Flicek, Searle, Harrow, Reecy, Ensembl team, Havana team, and Genome Sequencing Consortium

W619  Insights From Whole Genome Sequence Alignment Of The Domestic (Sus scrofa And Javan Warty (Sus verrucosus) Pigs
             Groenen, Megens, Crooijmans, Semiadi, and Schook

Workshop: Transposable Elements

W621  Bifurcation And Enhancement Of Autonomous-Nonautonomous Retrotransposon Partnership Through LTR Swapping In Soybean
             Du, Tian, Bowen, Schmutz, Shoemaker, and Ma

W622  Fighting Oobesity: How The Brachypodium Genome Stays Small
             Tanskanen, Mayer, and Schulman

W623  The Diversity, Specificity And Evolution Of Retroelements And Helitrons In Flowering Plants
             Bennetzen, Baucom, DeBarry, Estep, Estill, Feng, Vitte, Wang, Yang, Yao, and Zhu

W624  Who Is Moving Whom? Untangling Cross-Mobilization Of Transposons In Genomic Scales
             Yang

W625  When Repeats Meet Chromatin: Relationship Between Repeats And Heterochromatin Dynamics
             Fiston-Lavier, Vejnar, and Quesneville

W626  Content And Distribution Of Helitron Transposable Elements In Maize Genome
             Du, Fefelova, Caronna, He, and Dooner

Workshop: Weedy and Invasive Plant Genomics

W628  Evolutionary Dynamics Of Red Rice In Alternative Agroecosystem Management Systems
             Lawton-Rauh, Burgos, and Fischer

W629  The Origin Of Weediness In U.S. Red Rice
             Caicedo, Reagon, Thurber, Olsen, Gross, and Jia

W630  The Ipomoea Genome: An Analysis Of Weeds And A Domesticate
             Baucom, and Bennetzen

W631  Spread Of Herbicide Resistance Alleles In Lolium rigidum
             Malone, Boutsalis, and Preston

W632  Cheatgrass And The Black Fingers Of Death: Using Genomics To Study The Invasion Of Bromus tectorum In Western North America
             Coleman

W633  Understanding The Adaptation And Evolution Of Compositae Weeds
             Lai, and Rieseberg

Training Workshop: SSWAP

W635  An Introduction To The Semantic Web -- SSWAP: Simple Semantic Web Architecture And Protocol
             Gessler

Vendor Workshop: Keygene N.V.

W637  Keygene – Breakthrough Trait Strategies In Brassicaceae
             van Tunen

W638  The Genetics Of Brassicaceae Crops: Preparing For Genome Sequences
             Bancroft, and Trick

W639  From Traits To Genes
             Volpin

W640  KeyBase™ – A Novel Targeted Mutagenesis Method For Crop Species
             de Both

W641  Identification Of Heat-Resistant Genes via cDNA-AFLP And Microarray Experiments
             Mao, Wang, Liu, Yu, Peters, Mank, Prins, Tunen, and He

Vendor Workshop: Roche Nimblegen

W643  Rapeseed (B. napus) SNP Discovery Using A Dedicated Sequence Capture Protocol And 454 Sequencing.
             Pichon, Rivière, Duarte, Dugas, Wilmer, Gerhardt, Richmond, Albert, and Jeddeloh

Poster: Genome Sequencing & ESTs

P001  Improving The Quality Of DNA Libraries In The Next-Generation Sequencing Workflow
             Salowsky, Gassmann, and Glueck

P002  Assembly Improvement On Maize B73 Line Genome
             Yang, Ledeaux, Tabaska, Qiu, and Wu

P003  Mitochondrial Sequence Diversity Among Triticum Species
             Noyszewski, Lazo, Naxin, Gu, Meinhardt, and Kianian

P004  Transcriptomic Identification Of Candidate Genes Involved In Sugarcane Responses To Salt Stress Based On cDNA-SSH Analysis.
             Pagariya, Kulkarni, G.R, Devarumath, and Kawar

P005  Second Generation Sequence Analysis Of Wheat 7DS
             Berkman, McKenzie, Stiller, Duran, Imelfort, Eales, Marshall, Dolezel , Simkova, and Edwards

P006  A Snapshot Of Water-Logging Stress Transcriptome Of Sugarcane
             Khan, Gupta, Singh, Duttamajumder, Chauhan, Kapur, and Tyagi

P007  One Thousand Plant Transcriptome (1KP) Project: A First Look At Extremophyte And Weedy Plant Transcriptomes
             Stewart, Jr., Burris , Peng, Wong, and 1KP Consortium

P008  Mining MicroRNA Expression Data In Barley (Hordeum vulgare L.)
             Faccioli, and Colaiacovo

P009  Application Of mRNA Sequencing By Next-Generation Sequencer For Gene Expression Profiling In Rice (Oryza sativa L.)
             Mizuno, Kawahara, Sakai, Kanamori, Yamagata, Oono, Wu, Ikawa, Itoh, and Matsumoto

P010  Pyrosequencing/Sanger Plant Genome Assembly (Limitations, Problems And Solutions) - On The Way To Cucumber (Cucumis sativus L. cv. Borszczagowski) Draft Genome Sequence Publishing.
             Woycicki, and Przybecki

P011  Current State Of Tobacco Genome Sequencing
             Ivanov, Sierro, Gadani, and Peitsch

P012  Associations Between Transposable Elements And Genes In The Transcriptome Of Tobacco (Nicotiana tabacum)
             BUI, DELOGER, MAUNOURY, TRAN, DORLHAC de BORNE, DANIEL, MHIRI, VAN SLUYS, SIMON-PLAS, QUESNEVILLE, and GRANDBASTIEN

P013  Application Of 454 ™ Sequencing For Marker Development In Onion
             Baldwin, Pither-Joyce, Revanna, Fiers, Crowhurst, MacKnight, and McCallum

P014  Integration Of Genetics And Sequencing Of The Transcriptome And Gene Space Of Lettuce
             Matvienko, Kozik, Xu, Lavelle, Truco, McHale, Ochoa, and Michelmore

P015  Construction Of A Blueberry (Vaccinium corymbosium) Draft Genomic Sequence Using Multiple Platforms.
             Brown, Colman, Lommel, Rowland, Diener , Windham, and Burke

P016  Analysis Of Genomic Sequences From Lupinus luteus L.
             Urbina Saavedra, Olivos Trujillo, Navarro Navarro, Parra González, Aravena Abarzúa, Udall, Straub, Salvo Garrido, and Maureira Butler

P017  Canada Thistle Transcriptome Sequencing Using 454 Titanium
             Yu, Lai, and Rieseberg

P018  Total Utilization Flax Genomics (TUFGEN): A Genome Canada Project
             Cloutier, Rowland, Datla, Deyholos, Duguid, Fofana, Reaney, Selvaraj, Smyth, Wang, Weselake, Zou, and Barker

P019  Genomic Characterization Of Arabidopsis thaliana Extremophile Relatives: Thellungiella parvula
             Dassanayake, Oh, d’Urzo, Lambert, Galbraith, Cheeseman, Ali, Hernandez, Mikel, Yun, Bressan, Zhu, and Bohnert

P020  High-Throughput Sequencing, Assembly, And Annotation Of Expressed Sequences From Blueberry Fruit
             Patel, Yousef, Grace, Mbeunkui, Brown, Lila, and Loraine

P021  Differential Gene Expression Analysis For Sigatoka (Mycosphaerella eumusae) In Resistant Musa acuminata cv. Manoranjitham (AAA)
             Subbaraya, Balakrishnan, Raman, Suthanthiram, Marimuthu, and Asoor

P022  Whole Chloroplast Genome Sequencing In Fragaria Using Deep Sequencing: A Comparison Of Three Methods
             Njuguna, Liston, and Bassil

P023  454 Pyrosequencing Of Sweetpotato (Ipomoea batatas) Transcriptome
             Tincopa , Schafleitner, Palomino, Reinhard, and Bonierbale

P024  Use Of Biomark At The Toulouse Genomic Platform
             Bouchez

P025  Bioinformatic Analysis Of Sanger And 454 ESTs In Oak
             UENO, LE PROVOST, FRIGERIO, LEGER, KREMER, NOIROT, KLOPP, and PLOMION

P026  A Novel Method To Polyadenylate Plant Micro RNAs Containing 2’O-Methyl Group On The 3’-Terminal Ribose.
             Radek, Jendrisak , Hoffman, and Vaidyanathan

P027  Theobroma cacao Genome Sequencing And Assembly Strategy Evaluation
             Feltus, Blackmon, Ficklin, Haiminen, Kuhn, May, Motamayor, Saski, Schnell, and Staton

P029  Statistical Challenges On The 1000 Euro Genome Sequences In Plants (EU COST Action TD0801)
             Bink, Schiex, and Marshall

P030  Subergene: An EST Resource For Cork Oak (Quercus suber)
             Paiva, Capitão, Araújo, Leger, Marques, Fevereiro, Grima-Pettenati, Rodrigues, and Graça

P031  Genome Sequencing At A High School: Education Evolved
             Education Evolved

P032  Sequencing Based Expression Profiling To Dissect Transcriptional Signalling Networks During PTI Through Illumina Sequencing Of cDNA Tags Generated By Sonication
             Rallapalli, Kemen, MacLean, and Jones

P033  The Milkweed (Asclepias syriaca) Genome Project
             Liston, Cronn, and Fishbein

P034  Whole Genome Sequence (WGS) Analysis For Exploring Plant Relationships
             Rice, Cordeiro, Nock, Waters, Bowen, and Henry

P035  Measuring Gene Expression In Tetraploid Cotton Through Illumina Sequencing
             Standage, Flagel, Grupp, Wendel, and Udall

P036  Insights From Whole Genome And Transcriptome Sequencing Of Cotton
             Wilkins, Bharti, Crow, Kim, Abidi, Allen, Auld, Bednarz, Hequet, Wright, Mudge, and May

P037  Developing Genomic Resources For The Apiaceae
             Bowman, Senalik, Matvienko, Van Deynze, and Simon

P038  New Carrot Microsatellites — Linkage Mapping, Diversity Analysis And Transferability To Other Apiaceae
             Cavagnaro, Chung, Manin, Atkins, and Simon

P039  Whole Genome Sequencing And SNP Genotyping Of The Black Fingers Of Death
             Soliai

P040  DNA Fragmentation: A Critical First Step In Next-Generation Sequencing
             Khoja, Ventura, and Laugharn

P041  Treasure From The Desolation Islands And Beyond
             Robinson, Xiao, and Parkin

P042  A Rapid And Efficient Method To Prepare Di-Tagged cDNA Libraries From Small RNA For Discovery And Profiling By Deep Sequencing.
             Vaidyanathan, Jendrisak, Caruccio, and Pease

P043  Whole Genome Sequencing Of The Winter Mushroom, Flammulina velutipes
             Kim, Lee, Park, Kim, Beak, Chung , Kim, LEE , Kang, Kim, Lee, Hwang, Woo, Song, Hong, Kim, Kim, Cho, Kim, Yang , Kong , Lee , Kim, and Seo

P044  Description Of Glutathione S-Transferases In Psyllids
             Tamborindeguy, Hunter, and Bextine

P045  Genome Analysis Of Two Basidiomycete Pathogens In The Genus Moniliophthora That Cause Distinctly Different Diseases Of Theobroma cacao
             Carazzolle, Garcia, Lazerda, Thomazella, Schuster, Carlson, Guiltinan, Bailey, Zhang, Argueso, Mieckowski, Pereira, and Meinhardt

P046  The Comparison Of The Complete Mitochondrial Genomes Of Two Basidiomycete Phytopathogens In The Genus Moniliophthora
             Garcia, Medrano, Carazzolle, Lazerda, Thomazella, Schuster, Carlson, Guiltinan, Bailey, Argueso, Mieckowski, Pereira, and Meinhardt

P047  Development Of Genomic And Genetic Resources For Paysonia: A Model System To Investigate Evolutionary Mechanisms Of Speciation In The Brassicaceae
             Borrone, Fathepure, and Doust

P049  SNP Discovery For The Development Of High-Throughput Genotyping Arrays Using Next-Generation Transcriptome Sequences In Sunflower
             Bachlava, Taylor, Bowers, Tang, Zhang, Farmer, Ayyampalayam, Huntley, May, and Knapp

P050  Effects Of Filtering, Trimming, Sampling And K-mer Value On de novo Assembly Of Illumina GA Reads.
             Kozik, Matvienko, and Michelmore

P051  Tissue Specific Transcriptome Studies In The Parasitic Plant Triphysaria versicolor Using Next Generation Sequencing Technologies.
             Honaas, Wickett, Wafula, Zhang, Altman, Bao, McCombie, Schuster, Taylor, Yoder, Landherr, Wu, and dePamphilis

P052  Will Your Favorite Genome Be Sequenced?
             Fuerstenberg, and Boore

P053  A Draft Sequence Of The Melon Genome Revealed By High Throughput Shotgun Sequencing
             Benjak, Gonzalez, Mir, Arús, Aranda, Álvarez-Tejado, Droege, Du, Puigdomènech, and Garcia-MAS

P055  Small RNA Signature Sequencing Of Soybean Plants Infected With Tobacco Streak Virus (TSV) And Bean Pod Mottle Virus (BPMV)
             Jossey, and Domier

P056  Transcript Analysis Of Sedentary Parasitic Female Reniform Nematodes (Rotylenchulus reniformis) Identifies Candidate Parasitism Genes And Targets For RNA-Interference
             Wubben, Callahan, and Scheffler

P057  The Porcine Blastocyst Transcriptome Generated From 454-Sequencing Platform
             Tsoi, Zhou, Dixon, Foxcroft , and Dyck

P058  Construction Of Normalized cDNA Library In Differentiation And Transdifferentiation Of Bovine Myogenic Satellite Cell
             Lee, Bajracharya, Lee, Shin, Lee, Kim, Kang, Lee, and Choi

P059  SNP Discovery In Zebu And African Taurine Cattle By Whole Genome Sequencing Of Pooled DNA
             Noyes, Anderson, Archibald, Ashelford, Bradely, Finlayson, Kay, Kemp, Law, Lu, Smith, Talbot, Agaba, and Hall

P060  Evaluation Of Assemblers On 454 Data Of Highly Repetitive Eukaryotic Sequences
             Steuernagel, Schmutzer, Taudien, Wicker, Platzer, Mayer, Scholz, and Stein

P061  Genomics Of A Highly Virulent Campylobacter jejuni Clone Associated With Sheep Abortion In The United States
             Sahin, Sippy, Patil, Plummer, and Zhang

P062  Comparative Analysis Of The Mole Rat Transcriptome Based On 454 Pyrosequencing Of Brain And Muscle cDNA
             Malik, Avivi, Hernandez, Korol, and Band

P063  Transcriptome Analysis Of Male And Female Xiphophorus maculatus Jp 163 A
             Zhang, Wang, Wang, Liu, Warren, Mitreva, and Walter

P064  Sequencing Of Porcine Genes Using Full-Length-Enriched cDNA Libraries: Contribution To Annotation Of The Draft Sequence Of Pig Genome
             Uenishi, Morozumi, Toki, Tanaka-Matsuda, Eguchi-Ogawa, Rund, and Schook

Poster: Large Insert Libraries

P066  Construction And Characterization Of Mitochondrial Genome-Specific BAC Libraries For Four Lines Of Raphanus sativus
             Park, Lee, Choi, Lee, Karki, Kim, Kim, Kholilatul, Perumal, Jung, Lee, Kim, and Yang

P067  A BAC Library Resource For The Genus Glycine.
             Schmutz, Doyle, Shoemaker, Cregan, Ma, Schlueter, Song, Jetty, Angelova, Talag, Kudrna, Golser, Yu, Collura, Wittoski, and Wing

P068  Map-Based Cloning Of An Eastern Filbert Blight Resistance Gene In Hazelnut: Multiplex de novo Sequencing Of BACs Using Illumina IIG Sequencing By Synthesis
             Sathuvalli, and Mehlenbacher

P069  Strategies For Improving Genomic Region Isolation Using BAC Libraries.
             BELLEC, VAUTRIN, Prat, Helmstetter, Fourment, Gautier, Mercier , and BERGES

P070  Random Shear BACs And BAC Tools
             Wu, Ye, Jasinovica, Godiska, and Mead

Poster: Gene Isolation

P072  Progress Towards Positional Cloning Of The Barley Tillering Locus Uniculme4
             Elahe, Fusca, Ciannamea, Verderio, Close, Druka, Waugh, Muehlbauer, and Rossini

P073  Pss1 Confers Nonhost Resistance Of Arabidopsis Against Two Soybean Pathogens, Phytophthora sojae.And Fusarium virguliforme.
             Sumit, Sandhu, Xu, and Bhattacharyya

P074  Identification And Characterization Of Trichome Specific Upstream Sequences Of An Ethylene Response Factor (ERF) Gene Of Arabidopsis thaliana
             Kumar, Saha, Bhat, and Srinivasan

P075  Towards Development Of An Integrative Cassava Genome Analysis Platform For Advancing Cassava Molecular Breeding
             Seki, Sakurai, Matsui, Manabe, Matsui, Ishida, Tanaka, Shinozaki, Narangajavana, Triwitayakorn, Sojikul, Umemura, and Ishitani

P076  Early Molecular Events In Resistance To Verticillium Wilt Disease Revealed By Solexa Transcriptomics In Pima Cotton
             Wilkins, Lindquist, Qaisar, Bharti, Wheeler, May, and Mudge

P078  Isolation Of A Genomic Fosmid Clone Containing hspb1 (hsp27) Gene From The Pacific Bluefin Tuna Thunnus orientalis
             Ojima, and Oohara

Poster: High-Throughput Methods

P080  High-Throughput Genotyping Of Zea mays SNPs On The Taqmanreg Openarrayreg Platform
             Webster, Lu, Hayashibara, Goley, and Keys

P081  Keygene’s Crop Genome Center Assembling Genomes Of The 6F Crops: Food, Feed, Fiber, Flowers, Fuel And Fun
             van Eijk, Sørensen, van der Vossen, van Orsouw, Hogers, Janssen, Volpin, van Haaren, Michiels, Deslattes Mays, and van Tunen

P082  Development Of Multiplexed Perfect Markers For Screening Of Key Rice Traits
             Kharabian-Masouleh, Waters, Reinke , and Henry

P083  Targeted Re-Sequencing Of Gene Space In The Polyploid Wheat Genome By Sequence Capture
             Saintenac, Nicolet, and Akhunov

P084  Investigating Sequence Diversity In Hyaloperonospora arabidopsidis (Hpa) Using Illumina Sequencing
             Ishaque, Studholme, Kemen, Morris, and Jones

P085  A Brachypodium TILLING Library From A Physical And Chemical Mutagenesis Is Under Developing In Korea
             Lee, Kim, Kim, and Park

P086  A Fast Track To Genes Underlying Frost-Tolerance QTL In Lentil: Bulked-Extremes SuperTag Digital Gene Expression (BE-STDGE) Profiling
             CHECK

P087  Comparative Transcriptomics In Apple Using Quantitative 3’ Untranslated Region (UTR) Pyrosequencing
             Schaeffer, Krishnan, Kalyanaraman, and Dhingra

P088  Regulation Of Gene Expression In Compositae Weeds
             Bell, Dlugosch, Otto, Rieseberg, and Adams

P089  Batch Isolation Of Microsatellites From Tropical Plant Species Using Pyrosequencing
             Arias, Irish, Ballard, Duke, Liu, Simpson, and Scheffler

P090  Identification Of Single Nucleotide Polymorphisms (SNPs) In Expressed Sequence Tags (ESTs) Of Yam (Diascorea alata L)
             Narina, Sartie, Mignouna, Mohamed, and Asiedu

P091  Mu Transposon Insertion Sites And Meiotic Recombination Events Co-Localize With Epigenetic Marks For Open Chromatin Across The Maize Genome
             Liu, Yeh, Ji, Nettleton, and Schnable

P093  Robotic Preparation Of Genomic DNA, Plasmid DNA And RNA And Subsequent Analysis On A Microfluidic Platform
             Cabuslay, Wong-Ho, Singh, and Cohen

P095  Establishing Trait-Gene Relationships In Pyrus communis Using Genomic And Quantitative Transcriptome Profiling
             Hendrickson, Schaeffer, Koepke, Jiwan, Krishnan, Kalyanaraman, and Dhingra

P096  Genome & Transcriptome Analysis: Maximising The Benefits Of Next-Generation Sequencing By Combining Technologies
             Stangier

P097  Strategies For Next-Generation Sequencing And Bioinformatic Analysis
             Wright, Thimmapuram, Bachman, Hetrick, Vlach, Vullaganti, Sun, Donthu, Band, Mikel, Bohnert, and Hernandez

P098  Development Of A DNA Based Ao Blood Group Typing Method In Pigs And The Presence Of Allele Frequency Difference Among Breeds
             Nguyen, Choi, Lee, and Park

P099  High Throughput dsDNA Fragment Detection And Analysis By Parallel Capillary Electrophoresis With Fluorescent Detection
             Baker, and Siembieda

P100  An Improved Multiplex Expression Screen For The Discovery Of Biomass-Degrading Enzymes
             Brumm, Drinkwater, Boyum, Gowda, Steinmetz, Godiska, Burke, and Mead

P101  Identifying Specific Genes Controlling Complex Traits Through A Genome-Wide Screen For cis-Acting Regulatory Elements – An Example Using Marek's Disease
             MacEachern, Muir, Crosby, and Cheng

P102  Integrated Bioinformatics Approaches For Non-Model Organism Genomics Studies
             Britton, Fass, Joshi, and Lin

P103  Towards High-Throughput Structural Mapping Of Biopolymers By Hydroxyl Radical Footprinting Technology
             Schlatterer, Rigie, Pollack, and Brenowitz

P104  DNA Library Preparation: Simultaneous DNA Fragmentation And Adaptor Tagging By in vitro Transposition
             Caruccio, Grunenwald, Begum, and Maffitt

P105  Development Of A Comprehensive High Resolution Genotyping Method For SLA Class II Genes, DQB1 And DRB1, Using Genomic DNA PCR And Direct Sequencing
             Le , Park, Kim, Choi, and Park

P106  Identification Of Genetic Variants Using Pooled Multiplexed Sequencing
             Marroni, Pinosio, Zaina, Felice, Cattonaro, and Morgante

P107  Targeting Cattle QTL Regions By Solution Hybrid Selection For Resequencing
             Iso-Touru, Tiirikka, Virta, Laine, Auvinen, Paulin, and Vilkki

P108  Hybridization-Based Capture For Targeted Second Generation Sequencing Applied To Domestic Animals
             Wahlberg, Esquerre, Gut, Marthey, Capitan, Rodriguez, Boussaha, Grohs, Bed’hom, Bourneuf, Gut, Rogel-Gaillard, and Hugot

Poster: Other Genome Methodology

P110  Feasibility Of Physical Map Construction From Fingerprinted Bacterial Artificial Chromosome Libraries Of Polyploid Plant Species
             Luo, Ma, You, Anderson, Kopecky, Simkova, Safar, Dolezel, Gill, McGuire, and Dvorak

P111  Physical Map Of The Aegilops tauschii Genome And Its Utility For Physical Mapping Of The Wheat D Genome
             Dvořák, Luo, Deal, Ma, You, McGuire, Fass, Lin, Anderson, Huo, Gu, Sehgal, Kaur, Gill, Šafář, Šimková, Dolozel, and Ware

P112  Discovery Of Genes For Maize Seed Development By Transposon Mediated Mutagenesis
             Bell, Suzuki, Wu, and McCarty

P113  Identification Of Putative Peroxisomal Division Proteins In Arabidopsis
             Crumsey, Aung, and Hu

P114  Quantification Of The Ratio Of Plastid To Chromosomal Genome In Leaf And Root Tissue Of Carrot (Daucus carota) Using Real Time Quantitative PCR
             Bowman, Willis, and Simon

P115  RAD Longread: A SNP Discovery And de novo Sequence Assembly Approach
             Atwood, Gribbin, Boone, Nipper, Lillegard, and Johnson

P116  A Pipeline For Designing Custom TaqManreg Assays For Small RNA Genes
             Wong, Wang, Liang, Gulham, Cheng, Magdaleno, and Chen

P117  de novo Construction Of Transcriptomes
             Green, and Wells

P118  Mt-GOTA: A Genome Tiling Array For Copy Number Variation Detection In Fast Neutron Induced Deletion Mutants And Natural Accessions Of Medicago truncatula.
             Duvvuru Muni, Dai, Chen, Li, Zhao, and Chen

P119  High Yield, High Quality Genomic DNA From Cattle Nasal Samples Using Performagene™•Livestock
             Niles, James, Maclean, and Iwasiow

P120  Mouse Copy Number Analysis Using Quantitative TaqMan Copy Number Assays
             Li, Wang, You, Titus, Spier, Hartshorne, Goley, and Chen

Poster: General Marker Systems and Diversity

P122  Bonafide BDI™ – Pure PRG, A Novel DNA Based Diagnostic Test That Detects Annual Ryegrass Contamination In Perennial Ryegrass Seeds
             Pegadaraju, Schultz, and Kaufman

P123  Assessing Genetic Diversity In Centipedegrass Germplasm With Sequence-Related Amplified Polymorphism (SRAP) Markers
             Milla-Lewis, Harris, Zuleta, Schwartz, and Hanna

P124  Diversity Of Garlic (Allium sativum L.) Using SSR, EST And AFLP Markers
             Acharya, and Simon

P125  Hybridization Between Native And Introduced Rubus In California And The Pacific Northwest
             Clark, and Jasieniuk

P126  Custom Made Melon Single Feature Polymorphism (SFP) Array As A Marker Assisted Selection (MAS) Tool
             Ophir, Eshed, Harel-Beja, Tzuri, Portnoy, Cohen, Uliel, Burger, Schaffer, Katzir, and Sherman

P127  Identification Of Molecular Markers In Allotetraploid Cotton
             Yourstone, Maughan, and Udall

P128  Elaboration Of Tools For Studying The Genetic Diversity Of Amborella trichopoda In New Caledonia.
             de Kochko, Tranchant, Pillon, Guyot, Munzinger, Couderc, Santoni, Seveno, Hamon, and Poncet

P129  DNA Markers And FCSS Analyses Shed Light On The Genetic Diversity And Reproductive Biology Of Jatropha curcas L.
             Ambrosi, Galla, Purelli, Barbi, Fabbri, and Barcaccia

P130  in silico Strategies For Type I Molecular Marker Development For South African Abalone (Haliotis midae).
             Rhode, Jansen, du Plessis, and Roodt-Wilding

Poster: SSR

P132  Population Structure Of Switchgrass (Panicum virgatum L.) Using SSR Markers
             Acharya, Devos, Saha, and Brummer

P133  Molecular Genetic Diversity Of Icarda’s Worldwide Barley Landrace Collection
             Rice, Grando, Henry, Baum, and Ceccarelli

P134  Assessment Of Genetic Diversity And Population Structure Using Microsatellite Markers In Sesame (Sesamum indicum L.)
             Cho, Chung, Cho, Lee, Ma, Ra, and Park

P135  Genetic Variation Between Two Cucumber Genotypes Inferred From Genome-Wide Microsatellite Polymorphism Analysis
             Cavagnaro, Senalik, Harkins, Kodira, Simon, Huang, and Weng

P136  DNA Fingerprinting Of Grapevines (Vinifers, Rootstocks And Americans) By SSR Markers
             SantAna, Borem, Ribeiro, Rocha, and Cançado

P137  Characterization And Cross-Amplification Of Microsatellite Markers In Cymbidium Genus
             Kim, Moe, Chung, Chae, and Park

P138  Large Scale Development Of BAC-End Associated SSR Markers In Pigeonpea [Cajanus cajan (L.) Millspaugh]
             Dubey, Bohra, Kumar, Saxena, Penmetsa, Cheung, Saxena, Gothalwal, Singh, Kavi Kishor, Upadhyaya, Cook, and Varshney

P139  High Density SSR-Based Genetic Map Of The Pepper Genome
             Song, Yang, Ryu, Yu, Seo, Kwon, Hwang, Lee, Oh, Yun, and Kim

P140  Fingerprinting Southern Highbush Blueberry Cultivars And Breeding Selections
             Olmstead, and Rodriguez-Armenta

P141  Phylogenetic Analysis By Microsatellite Markers Of Mycosphaerella musicola Isolates From Different Banana Production Regions In Brazil
             Rocha, Pozza, Figueira , Cordeiro, Camargos , Araújo, and Cançado

P142  Microsatellite Markers Development For Efficient Genotyping Applications In Tea
             Bhardwaj, Kumar, Sharma, Ahuja, and Sharma

P144  Molecular Analysis Of Population Structure Of Spontaneous Fig Trees From Adriatic Coast
             Arbeiter, Hladnik, Jakse, and Bandelj

P146  Population Genetic Structure Of Ilex paraguariensis St. Hil., (Mate Tea): Inferences For Management And Conservation
             Pereira, Ciampi, Sousa, and Renno Azevedo

P147  Molecular Genotyping Of Gossypium hirsutum Lines With Resistance To Reniform Nematodes
             Sharma 1, Kantartzi2, and Stewart1

P149  Portable DNA Markers Tailored For Systematic Characterization Of Gossypium Germplasm
             Yu, Fang, Ulloa, Percy, Kohel, Hinze, Frelichowski, Cho, Campbell, Chee, Zhang, Abdurakhmonov, Abdukarimov, and Jones

P150  The Use Of BES And Genome Sequence Derived Microsatellite Markers For QTL Discovery.
             Bashir, Kazi, and Lightfoot

P151  Sampling Variation Of Map Expansion In An Advanced Intercross Line (AIL)
             Arango, Soller, Fulton, OSullivan, and Lipkin

P152  Y-Chromosome Haplotype Analysis Revealing Two Paternal Origins Of The Swamp Buffalo In China
             Lei, Zhang, Yue, Lan, Chen, and Liu

P153  Molecular Characterization Of Jatropha Genetic Resources Using Microsatellite Markers
             Ricci, Chekhovskiy, Albertini, Saha, and Falcinelli

P154  The Use Of Pyrosequencing As A Tool For Developing Microsatellite Markers For The Abalone, Haliotis midae
             Slabbert, Hepple, Bester-Van der Merwe, Franchini, and Roodt-Wilding

P155  New Spots For The Leopard Frog: de novo Microsatellites
             Wood, Woytenko, Kauspedas, Mastrocola, Lasley, and Brown

Poster: RAPD

P158  Molecular Characterization Of Alternaria linicola Isolates Pathogenic To Linseed(Linum usitatissimum L.)
             Singh

P159  QTL Analysis And Development Of Molecular Marker Associated With Phytophthora capsici Resistance In Pepper
             Lee, Yeon, Song, Kang, Kim, Park , Ahn, Yun, and Kim

Poster: AFLP

P162  An AFLP Protocol For Genotyping Rare Frogs
             Pressler, Ortiz, Holland, Webb, Keller, and Brown

P163  Identification Of AFLP Markers For The Rust Resistance Locus Ur-3 In Common Bean (Phaseolus vulgaris)
             Melmaiee, Todd, Liu, McClean , Lee, and Kalavacharla

P164  Towards Phytomedomics With Bitter Melon (Momordica charantia L.) As A Model
             Kole, Olukolu, Kole, and Abbott

Poster: SNP

P167  Identification Of Molecular Markers For Important Traits In Winter Barley Using Association Mapping
             Liu, Berger, Hall, Brooks, Chao, Griffey, and Muehlbauer

P168  High Throughput SNP Discovery In Wheat
             Song, Hyten, Jia, Choi, and Cregan

P169  Seeing Red: The Origin Of Grain Pigmentation In US Weedy Rice
             Olsen, Gross, Reagon, Hsu, Caicedo, and Jia

P170  Whole Genome SNP Discovery In Two Inbred Lines Of Maize With Second Generation Sequencing
             Wu, Hellsten, and Rokhsar

P171  Bromus tectorum L. (Cheatgrass) SNP Development Using 454 Sequencing Of EST Sequences
             Merrill, Elzinga, Coleman, and Meyer

P172  Design And Performance Of 44,100 SNP Genotyping Array For Rice
             Tung, Wright, Zhao, Reynolds, Montgomery, Tanimoto, Barkovich, Pirani, Eizenga, McClung, Bustamante, and McCouch

P173  Efficient SNP Discovery And Genotyping In Rice And Arabidopsis By Restriction Enzyme-Phased Illumina Sequencing Libraries (RESCAN)
             Comai, Monson-Miller, Fass, Ngo, Nicolet, Ram, Burkart-Waco, Lin, and Tai

P174  Genome–Wide SNP Discovery In Tetraploid Alfalfa
             Han, Kang, Torres-Jerez, Cheung, Town, Zhao, Udvardi, and Monteros

P175  Single Nucleotide Polymorphism Diversity In The Brassicaceae
             Hayward, McKenzie, Campbell, Tollenaere, Edwards, Wu, Liu, Wang, Redden, and Batley

P176  SNP Discovery And Genetic Mapping Of T-DNA Insertional Mutants In Fragaria vesca L.
             Ruiz-Rojas, Sargent , Shulaev , Pattison , Holt , Ciordia, and Veilleux

P177  Genetic Diversity In Common Bean (Phaseolus vulgaris L.)
             Hwang, Hyten, Gaofeng, Pastor-Corrales, and Cregan

P179  SNP Marker Informativeness In Soybean (Glycine max (L.) Merr.)
             Kantartzi, Reyes-Valdes, Ramos, and Meksem

P180  SNP Discovery via Genomic Reduction, Barcoding And 454-Pyrosequencing In Amaranth
             Maughan, Yourstone, Jellen, and Udall

P181  Discovery Of Genes For Improved Cellulose And Cellulose-Extractability From Poplar Secondary Xylem
             Wegrzyn, Eckert, Choi, Stanton, Tsai, and Neale

P182  Single Nucleotide Polymorphism (SNP) Genotyping In Diverse Genotypes Of Cultivated Pigeonpea And Wild Relatives With The Illumina GoldenGate Assay
             Kassa, Penmetsa, Farmer, Carrasquilla-Garcia, Datta, Upadhyaya, Wettberg, Bruening, Varshney, and Cook

P183  Phylogenetic Analysis Of Aurantioideae Plants Based On Sequence Information Obtained From A Nuclear Gene.
             Ramadugu, Manjunath, Lee, and Roose

P184  Insertional Mutants In Diploid Strawberry
             Veilleux, Ruiz-Rojas, Sargent, Pattison, Mills, Davis, Lindsay, Ferguson, Holt, Pantazis, Dan, and Shulaev

P185  SNP Discovery In Peach Germplasm Using A Next Generation Sequencing Platform
             Verde, Cattonaro, Scalabrin, Vendramin, Policriti, Del Fabbro, Quarta, Dettori, Sosinski, and Morgante

P186  Linking Candidate Genes To Biochemical Phenotypes In Avocado
             Tommasini, Calderon-Vazquez, Durbin, Ashworth, Mota-Bravo, De La Cruz, Acaraz-Silva, Diaz-Ochoa, Hanna, and Clegg

P187  A SNP Assay For Genotyping Theobroma cacao Suitable For Use Under Field Conditions.
             Livingstone, Freeman, Motamayor, Dadzie, Takrama, Schnell, and Kuhn

P188  Genome-Wide SNP Detection In Species With An Unsequenced Genome Using High Throughput Sequencing
             van Bers

P189  Development Of High-Throughput SNP Genotyping In Non-Model Inbred Systems
             Wright, Tung, Zhao, Reynolds, McCouch, and Bustamante

P190  Application Of High Resolution Melting Curve Analysis In Almond Biodiversity And Genetic Mapping
             Wu, Wirthensohn, Tavassolian, Rabiei , Hunt, Ford, Gibson, and Sedgley

P191  High-Throughput And Cost-Effective Discovery Of Restriction Associated DNA (RAD) SNPs And Conversion To Illumina’s GoldenGate Assays
             Mammadov, Chen, Ren, Nipper, Zheng, Greene, Thompson, and Kumpatla

P192  Genetic Analyses Of Sorting Of Paternally Transmitted Mitochondrial DNA
             CALDERON, and HAVEY

P193  Effect Of Strategies For SNP Discovery On The Estimation Of Population Genetics Parameters
             Negrini, Mazza, Colli, Nicolazzi, Marino, Pellecchia, Bomba, Stella, Williams, and Ajmone Marsan

P194  KASPar: A Simple And Cost-Effective System For SNP Genotyping
             Chen, Mingus, Mammadov, Backlund, Greene, Thompson, and Kumpatla

P195  Development Of A High-Resolution Melting Curve Method To Study The Genetic Diversity Of The Brine Shrimp (Artemia) Population Of Great Salt Lake, Utah.
             Avery, Sheen, and Gillette

P196  Markers On Bovine Chromosome 20 Associated With Carcass Quality And Composition Traits And Incidence Of Contracting Infectious Bovine Kerotoconjunctivitus
             Garcia, Matukumalli, Wheeler, Shackelford, Smith, and Casas

P197  Bayesian Clustering And Principal Coordinate Analysis Of The Population Structure And Origin Of The Domestic Cat
             Kurushima, Gandolfi, Lipinski, and Lyons

P198  Genome-Wide Comparison Of Ibizan Hound And Three Related Hound Dog Breeds
             Quilez, Altet, Short, Lombardo, Kennedy, Ollier, Sanchez, and Francino

Poster: Other Marker Related Topics

P201  Phylogenetic Analysis Of Seven WRKY Genes Across The Palm Subtribe Attaleinae (Arecaceae) Identifies Syagrus As Sister Group Of The Coconut
             Meerow, Noblick, Borrone, Couvreur, Mauro-Herrera, Hahn, Kuhn, Nakamura, Oleas, and Schnell

P202  SRAP Polymorphisms Associated To Increased Nonstructural Carbohydrates In Alfalfa
             Dube, Chouinard-Michaud, Castonguay, Michaud, and Bertrand

P203  COSII-Based Mapping And Diversity In The Solanaceae
             Rodríguez, Bonierbale, Ané, Mueller, and Spooner

P204  Oligonucleotides That Exist In High Frequency In EST-UniGenes Are Useful In Producing Polymorphism Among Watermelon Genotypes
             Levi, Wechter, Harris, Davis, and Fei

P205  Dcsto, Stowaway-Like Miniature Inverted-Repeat Transposable Elements (MITEs), Are Abundant And Polymorphic In The Carrot Genome
             Macko-Podgorni, Mscichowska, Grzebelus, Grzebelus, and Simon

P206  Identification And Characterization Of Intra-Genomic 5S rRNA Gene Variants In V. unguiculata
             Vijaykumar, Saini, and Jawali

P207  Identification Of Solanum habrochaites Introgression Lines That Quantitatively Influence Tomato Ripening
             Ogbefho, Cin, and Klee

P208  Association Analysis In Structured Plant Populations, An Adaptive Mixed LASSO Approach
             Wang, Baenziger, Dweikat, Eskridge, Crossa, and Wang

P209  Detecting Rare Mutations In Patient Samples By Comparative Allele-Specific TaqManreg Assay-Based PCR (castPCR)
             Tan, Guarin, Brzoska, and Chen

P210  ISSR Genotyping Of Endangered Plants Using An Optimized Workflow On The Applied Biosystems 3500xL Genetic Analyzer
             Davidson, Ingalls, Santhanam, Nordman, Johnson, Padilla, FISH, Joe, Hung, Pradhan, Felton, and Prince

P211  Construction And Validation Of A Prototype Microarray For High-Throughput Genotyping Of Salvia Species
             Olarte Guasca, Mantri, and Pang

P212  ISSR-Based Genetic Diversity Of Jatropha curcas Germplasm In China
             Cai, Wu, and PENG

Poster: Cytology, in situ, and Microcloning

P214  Cytogenetic Karyotyping Of Switchgrass Through The Identification And Utilization Of Dihaploid Lines
             Young, Lanzatella, Anderton, Hernlem, and Tobias

P215  Chromosome Analysis In Immortalized Cell Cultures Of Maize (Zea mays L.)
             Fluminhan, Soares, and Gonçalves

P216  Cytological Evaluation Of Some Doubled-Haploid Oat Lines
             Jellen, Tanhuanpaa, Coon, Svedin, and Kiviharju

P217  A Multi-Dimensional Approach To Comparative Genomics In Fragaria (Rosaceae)
             Liu, Lundberg, Eriksson, Hummer, Bassil, Njuguna, Mahoney, Shields, and Davis

P218  Developmental Regulation Of Nonrandom Formation Of Aneuploid Cells In Carrot Seedling Roots
             Zhang, Liu, and Li

P219  Characterization Of Dactylis subspecies By Using Some Classical And Molecular Cytogenetic Methods.
             Tuna, Buyukbasar, Teykin, Budak, Ohmido, and Yamada

Poster: General Comparative Mapping, Tagging, and Characterization

P221  Evolutionary History Of Non-Specific Lipid Transfer Proteins
             Edstam, and Edqvist

P222  Identification Of Loci Under Selection During Chicken Domestication Through Whole Genome Sequencing
             Eriksson, Rubin, Zody, Meadows, Sherwood, Webster, Jiang, Ingman, Sharpe, Ka, Hallböök, Besnier, Carlborg, Bed’hom, Tixier-Boichard, Jensen, Siegel, Lindblad-Toh, and Andersson

P223  DNA Reveals The Secrets Of The Ancient Masters
             Raggi, Vagnini, Sassolini, Miliani, and Albertini

P224  Comparative Genomics Analysis Of Alternative Splicing Events In Cow And Goats
             King, Sayre, and Harris

P225  The MITEs, They Are A Changin
             Buchmann, and Wicker

P226  Sequence And Phylogenetic Analyses Of Diverse Plant Dehydrins And Their Promoters: Do They Reflect Survival In Different Environments?
             Bassett, Gasic, Dardick, Wisniewski, and Fisher

P227  A New Source Of Genetic Variation: Intraspecific Variation And Evolution Of Gene Family Sizes In Plants
             Zhang, Wu, Lee, Liu, Rong, Santos, Wu, Xie, Nelson, and Zhang

P228  Genome-Wide Analysis Of NAC Transcription Factor Family In Rice And Arabidopsis
             NURUZZAMAN, SHARONI, Manimekalai, Satoh, Kondoh, Ooka, and Kikuchi

P229  ArkMAP: The ArkDB Map Drawing Application - Integrating Genomic Maps Across Species And Datasources
             Paterson, Ifthkar, and Law

P230  Evolutionary Pressure On Multigene Type I Interferon Subfamilies
             Walker, and Roberts

P232  Genome-Wide Comparison Of NBS-LRR Genes In Sorghum bicolor And Oryza sativa
             Li, Wang, and Paterson

P233  Evolution Of Xyloglucan-Related Machinery In Green Plants
             Del Bem, and Vincentz

P234  Some Data On Allele Diversity At Orthologous Candidate Genes In GCP Crops
             This, Courtois, Philippe, Mournet, Billot, Glaszmann, Schaftleitner, Simon, Rojas, Bonierbale, Varshney, Hash, Upadhyaya, Nayak, Brunel, El Malki, Le Paslier, McNally, Baum, Choumane, Von Korff, Blair, and Fregene

P236  Genome-Wide Sequence Comparison Of Centromeric Regions And BAC-Landing On Chromosomes Provide New Insights Into Centromere Evolution Among Wheat, Brachypodium, And Rice
             Qi, Friebe, Gu, Qian, and Gill

P238  Comparative Analysis Of Transposable Elements In Several Fungal Genomes
             Amselem, Flutre, Dominguez Del Angel, Lebrun, Cuomo, Martin, Rouxel, Spanu, and Quesneville

Poster: Rice

P240  Adaptive Evolution Of The Centromeric Histone CENH3 In Oryza Species
             Hirsch, Wu, Yan, and Jiang

P241  Genetic Variation In Biomass Traits Among 20 Diverse Rice Varieties
             Leach, Jahn, Bordeos, Baraoidan, Stephens, Peachey, Bush, Leung, and McKay

P242  Evolutionary History Of Wild And Cultivated Asian Rice Deciphered By Gene Tree Incongruence Analysis
             Yang, Sakai, and Itoh

P244  Performance Of Support Vector Machine And General Linear Model For Accuracy And Variance Estimates Of Complex Traits In Rice
             Silva, and Oard

P245  Linkage Disequilibrium And Genome-Wide Association Studies In O. sativa
             Zhao, Wright, Tung, Reynolds, Eizenga, McClung, McCouch, and Bustamante

P246  Functional Characterization Of The Rice NAC Transcription Factor OsNAM-1
             Distelfeld, Scherrer, Uauy, Akhunov, Fahima, and Dubcovsky

P247  Detail Analysis Of Rice Anther Transcriptomes
             Huang, Wei, Wu, Huang, and Hsing

P248  Marker-Assisted NIL Development Of An Oryza sativa X Oryza rufipogon Cross Using SSRs, Indels And SNPs
             Imai, Kimball, Moon, McClung, and McCouch

P249  Application Of Illumina BeadXpress 384-Plex SNP Sets For Diversity Analysis And Genetic Mapping In Rice.
             Thomson, Zhao, Wright, Reynolds, Rahman, Ismail, McNally, Bustamante, and McCouch

P250  Analysis Of Somaclonal Variation Of Regenerated Rice By Next Generation Sequencing
             Miyao, Ohnuma, Nakagome, Yamagata, Kanamori, Ikawa, Takahashi, Matsumoto, and Hirochika

P251  Comparative Genomics Of A Rice Centromere
             Walling, Wu, Hirsch, Gao, Fan, Wing, Jackson, and Jiang

P252  Association Mapping Of Grain Quality And Flowering Time In Elite Japonica Rice Germplasm
             Silva, Ordonez, and Oard

P253  Evaluation Of Allele Frequencies Within 182 Korean Modern Rice Cultivars At 190 SSR Loci And Associations With Major Agronomic Traits
             Jeung, and Noh

P254  A “Rice Diversity Panel” Evaluated For Variation In Agro-Morphological And Grain Quality Traits Among The Genetically Defined Subpopulations
             Ali, Eizenga, Jia, McClung, and McCouch

P255  Development Of Interspecific Cssls In Rice Using SNP-Based Selection
             Kim, Eizenga, Ahn, Zhao, Wright, Reynolds, and McCouch

P256  Examining The Relationship Between H3K27me3 And Gene Expression In Rice Endosperm Using Chip-Seq
             Malone, Bridges, Tan, and Peng

Poster: Wheat, Barley, Rye, Oat, and Related

P258  Nonautonomous Retrotransposon BARE2 Are Abundant, Active And Packaged Into Virus Like Particle
             Chang, and Schulman

P259  Identification Of A Soil-Borne Wheat Mosaic Virus Resistance QTL And The Effect Of The Disease On Agronomic And End-Use Quality Traits.
             Crowley, Baenziger, Dweikat, Graybosch, Eskridge, Byrne, and Haley

P261  Identifying Novel Traits And Genetic Markers For Ear Fertility In Wheat In The UK By Introgressing Novel Large-Ear Phenotype CIMMYT Germplasm
             RIBAS VARGAS, de Silva, Gaju, Werner, Dodds, Sylvester-Bradley, Reynolds, Mayes, and Foulkes

P262  Fine Mapping Of Durable Resistance To Stripe Rust In The South African Wheat Cultivar, Kariega, Using An Expressed Sequence Tag (EST) Marker Strategy
             Agenbag, Boyd, Pretorius, MacCormack, and Prins

P263  Fine Mapping Of Two Major QTLs On Chromosomes 2BL And 3BS Controlling Yield In Durum Wheat
             Graziani, Aloisio, Maccaferri, Paux, Salse, Choulet, Feuillet, Sanguineti, Demontis, and Tuberosa

P264  Genetic Map Of Stem Rust Resistant Gene Sr35 In T. monococcum
             Zhang, Rouse, Abate, Jin, and Dubcovsky

P265  Association Analysis Of FHB Resistance In Soft Winter Wheat
             Benson, Brown-Guedira, Holland, Sneller, and Murphy

P266  Validation Of Molecular Markers Associated With Pre-Harvest Sprouting Tolerance In A Winter Wheat (Triticum aestivum L.) Doubled Haploid Population
             Kottke, Bai, Fritz, Valdez, Mendoza, and Haley

P267  Molecular Marker Analysis Of Kernel Weight And Size In Bread Wheat
             Shariati J., Nachit, Aung, Tavakol, Ponnaiah, Pagnotta, Pè, and Porceddu

P269  QTL Analysis On Wheat Crossability With Rye And Allelic Variation In Pollen Tube Growth.
             Mishina, Sato, Manickavelu, Sassa, and Koba

P271  QTL Analysis Of Root Traits Using E-Bayesian Statistics And Chromosome Arm Specific Rye-Wheat Recombinants In Bread Wheat
             Sharma, Xu, Ehdaie, Hoops, Close, Lukaszewski, and Waines

P272  Identifying Quantitative Trait Loci For Three Physiological Traits And Grain Yield In A Recombination Inbred Line Population Of Wheat (Triticum aestivum L.)
             Zhang, Li, Zhao, Chu, Souza, Zemetra, and Chen

P273  Comparative Analysis And Fine Mapping Of A Major Preharvest Sprouting QTL In White Winter Wheat
             Somyong, Tanaka, Munkvold, Benscher, and Sorrells

P274  SNP Discovery And Mapping In Durum Wheat
             van der Vossen, Trebbi, de Heer, van Orsouw, Maccaferri, Sanguineti, Tuberosa, Massi, and Sørensen

P275  Analysis Of Photoperiod Requirement Of Soft Winter Wheat From The Eastern United States
             Guedira, Marshall, and Brown-Guedira

P276  Screening For Candidate Genes And QTLs Controlling Seed Dormancy In Wheat
             Gerjets, Scholefield, Foulkes, Lenton, and Holdsworth

P277  QTL Analysis And Genetic Basis Of Delayed Senescence In Spring Wheat
             Naruoka, Sherman, Lanning, Blake, and Talbert

P278  QTL Mapping For Bread Making Quality And Agronomic Traits In Winter Wheat Under Different Soil Moisture Levels
             El-Feki, Byrne, Reid, Lapitan, and Haley

P279  Validation Of Single Feature Polymorphisms In Wheat Using Rice Synteny And 454 Sequencing.
             Jordan, and Banks

P280  Identifying Molecular Markers Associated With Hessian Fly (Mayetiola destructor [Say]) Resistance In The Spring Wheat Cultivar (Triticum aestivum L.) ‘Louise’
             Carter, Cambron, Ohm, Bosque-Perez, and Kidwell

P281  Association Mapping For Identifying Chromosome Regions Associated To Septoria tritici Blotch Response In Durum Wheat
             Maccaferri , Talebi, Kema, Tuberosa, and Sanguineti

P282  Association Mapping Of Fusarium Head Blight In A French Winter Wheat Population
             LE COUVIOUR, FLODROPS, GUERREIRO, BEAUCHENE, BEAUFUME, and PRAUD

P283  Molecular Genetic Description Of The Cryptic Wheat-Aegilops geniculata Introgression Carrying Rust Resistance Genes Lr57 And Yr40 Using Wheat ESTs And Synteny With Rice
             kuraparthy, Sood, and Gill

P284  The WheatCAP Project: Creating Public Long-Term Tools And Capabilities For Wheat Improvement
             Soria, Sherman, Anderson, Baenziger, Bai, Berzonsky, Brown-Guedira, Campbell, Carver, Chao, Fritz, Griffey, Haley, Johnson, Kianian, Kidwell, Matthews, Mergoum, Ohm, Peterson, Riera Lizarazu, Rudd, Talbert, Sorrells, Souza, Yan, and Zemetra

P285  Tritigen: Triticeae Genomics For The Advancement Of Essential European Crops
             Schulman, and COST Action FA0604 Partners

P286  A First Survey Of The Wheat Chromosome 5a Composition Through A Next-Generation Sequencing Approach
             Vitulo, Albiero, Forcato, Campagna, Dal Pero, Cattivelli, Bagnaresi, Colaiacovo, Faccioli, Lamontanara, Simkova, Dolezel, Lucretti, Perrotta, Giuliano, Valle, and Stanca

P287  Development Of PCR Assays And Marker-Assisted Transfer Of Rust Resistance Genes Lr57/ Yr40 And Lr58 Into Adapted Winter Wheats
             Kuraparthy, Sood, Brown-Guedira, See, and Gill

P288  Genome-Wide Survey Of Homoeolog-Specific Gene Expression In Polyploid Wheat
             Akhunova, Matniyazov, and Akhunov

P289  Genetic Study Of Resistance To Wheat Streak Mosaic Virus In Winter Wheat Line CO960293-2
             Lu, Price, Rudd, Devkota, and Rush

P290  Mining The Allohexaploid Wheat Genome For Useful Sequence Polymorphisms
             Brenchley, DAmore, Edwards, Barker, Bevan, Hall, and Hall

P291  Effects Of Glutenin Loci Allelic Diversity And Rye Translocations On Dough And Bread-Making Properties Within U.S. Hard Winter Wheat Breeding Programs.
             Harmer, St. Amand, Bai, and Seabourn

P292  Building Physical Map Of Wheat Chromosome Arm 3DS
             Bartos, Magni, Safar, Simkova, Livon, Cattonaro, Scalabrin, and Dolezel

P293  Transfer Of Stem Rust Resistance From Aegilops searsii Into Common Wheat By Molecular And Cytogenetic Approaches
             Liu, Friebe, Gill, and Pumphrey

P294  Two Homoeologous Wheat Genes Confer Sensitivity To A Single Host-Selective Toxin And Susceptibility To Stagonospora nodorum Blotch (SNB)
             Zhang, Friesen, Shi, Rasmussen, and Faris

P295  Wheat Genomic Data In GnpIS The URGI Information System
             Alaux, Verdelet, Keliet, Kimmel, Brault, Mohellibi, Hilselberger, Durand, Luyten, Reboux, and Steinbach

P296  A Candidate Gene For Aphid Resistance In Wheat
             Azhaguvel, Weng, Ma, Luo, Simkova, Dolezel, and Rudd

P297  Mapping Of A Novel Source Of Non-Race-Specific Leaf Rust Resistance In The CIMMYT Wheat Line Weebill 1
             Seda, Zhang, Singh, Kolmer, Huerta-Espino, Jin, Chao, and Anderson

P298  Effect Of The Short Arm Of Chromosome 1 Of Rye On Root Morphology, Anatomy, And Nutrient Uptake In Bread Wheat
             Sharma, DeMason, Ehdaie, Lukaszewski, and Waines

P299  Fine Mapping Of A Major QTL On Chromosome 4A Controlling Seed Dormancy In Wheat
             Torada, and Koike

P300  Towards Positional Cloning Of A Russian Wheat Aphid Resistance Gene On Chromosome 7D Of Wheat
             Simkova, Valarik, Lapitan, Peng, Ma, Luo, Petzold, Taudien, Robert-Quatre, Stankova, Safar, Bartos, and Dolezel

P301  Genetic Mapping Of Thirteen Drought Tolerance Candidate Genes In Wheat (T. aestivum)
             Hu, Chen, Wu, and Chu

P302  Genetic Maps Of Stem Rust Resistance Gene Sr13 In Tetraploid Wheat
             Simons, Abate, Chao, Zhang, Rouse, Jin, and Dubcovsky

P303  Quantitative Trait Loci For High-Temperature Adult-Plant Resistance To Stripe Rust (Puccinia striiformis f. sp. tritici) In A Hard Red Winter Wheat Germplasm IDO444
             Chen, Souza, Guttieri, Chen, Chu, Xu, Hole, and Zemetra

P304  Mapping Of QTL For Grain Iron And Zinc Content In Diploid A Genome Wheat And Validation Of These Loci In U And S Genomes
             Singh, Chhuneja, Tiwari, Rawat, Neelam, Aggarwal, Malik, Keller, and Dhaliwal

P305  Fine Mapping Of The Major QTL For Pre-Harvest Sprouting (PHS) Resistance In Wheat
             Liu, and Bai

P306  The TriticeaeGenome Project: Genomics For Triticeae Improvement
             Feuillet, Schulman, and Lagendijk

P307  A New Strategy To Map scs Genes: Combining Radiation Hybrid Mapping With High Resolution Genetic Mapping
             Ghavami, Michalak, Riera-Lizarazu, Gu, Thilmony, Maan, and Kianian

P308  Mutation Breeding For Selective Herbicide Resistance In Barley
             Lee

P309  Hunting Candidates For The Net Blotch Resistance Gene Rpt5 In Barley
             Manninen, Serenius, Erkkilä , Tanskanen, Tiirikka, and Schulman

P310  Towards Physical Mapping And Sequencing The Fr-H2 (Frost Resistance-H2) Region Of Barley Chromosome 5H
             Francia, Pasquariello, Barabaschi, Tondelli, Schulte, Stein, Stockinger, Stanca, and Pecchioni

P311  Simultaneous Genetic Analysis Of Winter Hardiness Traits And Development Of Winter Malting Barley Varieties
             Fisk, Hayes, Henson, Schmitt, Baenziger, Cooper, Bedo, Waugh, Cistue, Cuesta-Marcos, Filichkina, and Corey

P312  Biological Function Of Barley Cleistogamy Gene cly1
             Komatsuda, Wang, Nair, Turuspekov, Pourkheirandish, Sinsuwongwat, Sameri, Chen, Kanamori, Honda, Watanabe, Stein, Wicker, Tagiri, Nagamura, and Matsumoto

P313  Towards Elucidating The Role Of HvRIN4 In Rpg1-Mediated Stem Rust Resistance In Barley
             GILL, NIRMALA, BRUEGGEMAN, and KLEINHOFS

P314  Duplication And Functional Differentiation Of The HD-ZIP I Transcription Factor Gene HvHOX2 Generated The Barley Six-Rowed Spike Gene Vrs1
             Sakuma, Pourkheirandish, Matsumoto, Sassa, Koba, and Komatsuda

P315  Fine Mapping And Identification Of The Candidate Genes For Barley Third Outer Glume (trd) Locus.
             Houston, Druka, Bonar, Franckowiak, Lundqvist, Alexander, Morgante, Stein, Harrap, and Waugh

P316  Exploring A Fast Neutron Barley Mutant Population: Analysis Of Phytic Acid Accumulation In Seeds
             Ingvardsen, and Rasmussen

P317  Association Mapping Of Heading Date Using Balanced And Unbalanced Data From The Barley Coordinated Agricultural Project
             Wang, Smith, Chao, Neate, Blake, and Muehlbauer

P318  High-Graminan Barley Straw: A Novel Resource For Biofuels And Culinary Fructans
             Blake, Pauli, and Blake

P319  Positional Cloning Of The Gene Dense Spike (dsp1) On Barley Chromosome 7H By Utilization Of Next Generation Grass-Genomic Tools
             Shahinnia, Druka, Waugh, Morgante, and Stein

P320  Tandem Segmental Duplications Through The CBF2a-CBF4b Genomic Region At Frost Resistance-H2 Occur In vrn-H1 Winter Barley Cultivars ‘Dicktoo’ And ‘Nure’, While Single Copies Of Cbf2 And Cbf4 Occur In Vrn-H1 Spring Cultivars ‘Morex’ And ‘Tremois’
             Dhillon, Knox, Cheng, Tondelli, Pecchioni, and Stockinger

P321  Saturation Mapping And Genomic Analysis Of A Barley 6H Region Harboring Multiple Net Form Net Blotch Resistance Genes
             Liu, Faris, Edwards, Rasmussen, and Friesen

P322  Safeguarding World Wheat And Barley Production Against Russian Wheat Aphid: An International Pre-Breeding Initiative
             Cakir, Vitou, Lawson, Haley, Peairs, Mornhinweg, Bohssini, Ogbonnaya, Lage, Tolmay, Malinga, Edwards, Christopher, Castro, Franckowiak, Kuchel, Jacobs, Barclay, Gelalcha, and Sheppard

P323  Genome-Wide Association Mapping In Barley: From Simulations To Fine-Mapping
             Cockram, White, Zuluaga, Mackay, Luo, Kearsey, Comodran, Marshall, Ramsay, Thomas, Harrap, Werner, Tapsell, Balding, AGOUEB, Waugh, and OSullivan

P324  Transcriptome Analysis Of A Breeding Program Pedigree Reveals Target Genes For The Improvement Of Malting Quality
             Muñoz-Amatriaín, Xiong, Bilgic, Budde, Schmitt , Smith, and Muehlbauer

P325  Association Mapping Of Stem Rust Race TTKS Resistance In Barley Breeding Germplasm From The USA
             Zhou, and Steffenson

P326  Comparing Haplotypes And Single Markers For Association Mapping In Barley
             Lorenz, Hamblin, and Jannink

P327  Small Population Sizes In A Barley Association Mapping Study: Can We Still Find True QTL?
             Gutierrez, Cuesta-Marcos, Castro, and Hayes

P328  On The Road To A High Density Genetic Linkage Map Of Wheat Chromosome 5A
             Barabaschi, Faccioli, Colaiacovo , Orrù, Bagnaresi, Šimková , Doležel , Kilian , Francia, Fricano, Blanco, Valé, Cattivelli, and Stanca

P329  Breeding Crown Rust Resistant Cultivar Using Marker-Assisted Selection In Italian Ryegrass (Lolium multiflorum Lam).
             Hirata, Fujimori, Sasaki, and Cai

P330  QTL For Important Breeding Characteristics In The Doubled Haploid Oat Progeny
             Tanhuanpää, Manninen, Beattie, Eckstein, Scoles, Rossnagel, Kalendar, Schulman, Eurola, Hietaniemi, Jalli, Pietilä, and Kiviharju

P331  Development And Characterization Of D-Genome Radiation Hybrids Of Wheat (Triticum aestivum L.)
             Tiwari, Kumar , Michalak, Ghavami, Gunn, Leonard, Denton, Gu, Luo, Lazo, Kianian, and Riera-Lizarazu

P332  Precise Mapping The Powdery Mildew Resistance Locus QPm.tut-4A In Wheat Using Barley, Brachypodium, And Rice Collinear Regions
             Valarik, Jakobson, Timofejeva, Kladivova, Järve, and Dolezel

P333  The pBrachyTAG Vector System: New Tools For Brachypodium Functional Genomics
             Thole, Worland, Wright, Bevan , and Vain

P334  Mapping And QTL Analysis For Stem Rust Resistance In Lolium
             Pfender, Slabaugh, and Saha

P335  Genetic Mapping Of PmG3M, A Novel Powdery Mildew Resistance Gene Derived From Wild Emmer Wheat, Triticum dicoccoides, By Utilization Of Comparative Genomic Tools
             Ben-David, Xie, Dinoor, and Fahima

P336  Fine Scale Genetic And Association Mapping Of The Hulless Trait In Cultivated Oat, Avena sativa
             Gardner, Wight, Molnar, Yan, Mitchell Fetch, and Tinker

P337  An Improved Protocol For High Informative Content BAC Fingerprinting (HICF)
             Cattonaro, Magni, Schreiber, and Sartori

P338  Insertional Mutagenesis Of Brachypodium distachyon
             Bragg, Wu, Gu, Lazo, Anderson, and Vogel

Poster: Maize, Sorghum, Sugarcane, and Related

P341  An Advanced 8-Ways Breeding Scheme For Generating A Large Multi-Parental RI Population In Maize
             Pea, Aung, Gianfranceschi, Salomoni, and Pe

P343  Construction And Characterization Of A 5X Bacterial Artificial Chromosome (BAC) Library For The Aspergillus flavus Resistant Maize Line Mp313E
             Shan, Williams, and Peterson

P345  Comparative Genome Hybridization Of Maize Inbreds And Their Wild Ancestor, Teosinte
             Ying, Springer, Yan, Ji, Yeh, Jia, Wu, Jacob, Rosenbaum, Barbazuk, Jeddeloh, Nettleton, and Schnable

P346  The Genetic Architecture Of Complex Disease Resistance In Plants: Northern Leaf Blight In Maize
             Poland, Maize Diversity Project, and Nelson

P347  Differential Fates Of Polyploid Subgenomes And The Origin Of Maize
             Stein, Levy, Wei, Spooner, Liang, Pasternak, and Ware

P348  Iron Biofortification Of Maize Grain
             Hoekenga, Lungaho, Tako, Kochian, and Glahn

P349  Association Mapping In Maize (Zea mays) At Biogemma
             Mezmouk, Décousset, Derory, Renault, Mangin, Tixier, Bosio, Tatout, Dubreuil, and Praud

P350  The Maize And Medicago truncatula Genomes Comprehensively Elucidated By Single Molecule Analysis
             Zhou, Nguyen, Goldstein, Wei, Bechner, Potamousis, Lu, Pape, Pasternak, Monaghan, Wise, Ware, Town, Wing, Waterman, and Schwartz

P351  EuGene-Maize: A Web Site For Maize Sequence Structural Annotation
             Montalent, and Joets

P352  The Role Of Ramosa1 In The Evolution Of Inflorescence Branching Architecture In The Grass Tribe Andropogoneae (Poaceae)
             Sigmon, Kellogg, and Vollbrecht

P353  Genetic Transformation Of Commercial Sugarcane With The Snowdrop Lily Lectin And Evaluation Of Its Resistance To The Mexican Rice Borer
             SOLís-Gracia, Alvarez, Park, Molina, Mirkov, and da Silva

P354  Gene Expression Profiling In Saccharum officinarum And S. spontaneum Using The Affymetrix GeneChip reg .
             Glynn, and Comstock

P355  Differential Gene Expression In Sugarcane Under The Drought Stress
             Pedrozo, Jifon, Barbosa, Park, Gracia, and da Silva

P356  Exploitation Of Intron-Flanking EST Markers For Saccharum Complex
             Park, Solis-Gracia, Anguiano, and da Silva

P357  Bridging The Gene To Phenotype Gap: A Set Of Integrated Resources For Sorghum
             Mace, Hunt, Shatte, Cruickshank, Henzell, and Jordan

P358  Towards The Systematic Mutagenesis Of Sweet Sorghum (Sorghum bicolor (L.) Moench) Genome By Gamma Ray: Screening Dwarf Mutants And Analysis Of Candidates For The Corresponding Genes
             Ordonio, Tokunaga, Yamamura, Song, Matsumoto, Kasuga, Kitano, Matsuoka, and Sazuka

P359  Bloomless (bm) And Brown Midrib (bmr) Mutation Induction Of Sorghum (Sorghum bicolor) Through Gamma-Ray Irradiations
             Nakagawa, Takyuu, Yamanouchi, and Muramatsu

P360  Phenotypic Changes In Sorghum Derived By Influencing Of The Gibberellic Acid Pathway By Mitochondrial Recombination
             De la Rosa Santamaria, Xu, and Mackenzie

P361  Multi-Environment QTL Analysis For Drought Tolerance In Sorghum Using Mixed Models In A Sorghum RIL Population
             Sabadin, van Eeuwijk, Malosetti, Boer, Schaffert, Tardin, Santos, Gomide, Andrade, Albuquerque, Guimarães, and Magalhaes

P362  Identification Of Genomic Regions Carrying Alleles For Resistance To Greenbug Biotype I In Sorghum
             Punnuri, and Huang

P363  Association Mapping For Aluminum Tolerance In Candidate Regions Of The AltSB Locus In Sorghum
             Caniato, Guimaraes, Kresovich, Mitchell, Hamblin, Zhang, Glaszmann, Schaffert, Kochian, and Magalhaes

P364  Genetic Dissection Of Bioenergy Traits In Sorghum
             Vermerris, Saballos, Pedersen, Sattler, Kresovich, Murray, Rooney, and Xin

P365  Global Expression In Sorghum Brown Midrib Mutants; To Improve Biomass For Biofuels
             Sattler, Kim, Mudge, Farmer, Funnell-Harris, and Pedersen

P366  Marker Enrichment And Identification Of BAC Clones For The Apomixis Genomic Region In Guineagrass (Panicum maximum Jacq.)
             Takahara, Ebina, Iimura, Takamizo, and Nakagawa

P367  Evolution Of Neutral And Flowering Genes Under Domestication In Pearl Millet
             LAKIS, REKIMA, NAVASCUÉS, LAMY, REMIGEREAU, LEVEUGLE, DEPAULIS, and ROBERT

P369  Development Of Tall Fescue (Lolium arundinacea) SNP Molecular Map And Identification Of QTLs For Drought Tolerance
             Azhaguvel, He, Chekhovskiy, and Saha

P370  Snapshots Of Selection: Changes In SNP Allele Frequencies During Phenotypic, Marker-Assisted, And Genomewide Selection In Maize
             Massman, Jung, and Bernardo

P371  Subgenome Collinearity, Disomic Inheritance, And Synteny Within Tetraploid Switchgrass Linkage Maps
             Okada, Lanzatella-Craig, Saha, and Tobias

P372  Development Of Genomic And Genetic Tools For Foxtail Millet, And Use Of These Tools In The Improvement Of Biomass Production For Bioenergy Crops
             Doust, Mauro-Herrera, Malahy, Stromski, Estep, Percifield, Wang, Wu, Wu, Zale, Devos, and Bennetzen

P373  Development Of EST Resources In Pearl Millet And Their Use In Development And Mapping Of EST-SSRs In Four RIL Populations
             Rajaram, Varshney, Vadez, Nepolean, Senthilvel, Kholová, Choudhary, Supriya, Kumar, Thakur, Sharma, Pandurangarao, Rai, Velu, Sahrawat, Bhasker Raj, Blümmel, Narasu, Kocová, Kavi Kishor, Yadav, Singh, and Hash

P374  Modeling Recombination In Breeding And Mapping Populations For Increasing Crop Improvement Gain And QTL Mapping Resolution
             Murray

Poster: Brassicas, Arabidopsis

P376  Development Of High Density Integrated Reference Genetic Map For Multinational Brassica rapa Genome Sequencing Project
             Li, Ramchiary, and Choi

P377  Use Of Genomic Knowledge In Arabidopsis For The Improvement Of Seed Yield In Oilseed Rape
             Van Daele , Van Glabeke, Vuylsteke, Inzé, and Roldán-Ruiz

P378  SNP Discovery In Brassica napus Using 454 Titanium Sequencing
             Sidebottom, Clarke, Li, Higgins, Links, Parkin, and Sharpe

P379  Large Scale Genetic Map Integration In Brassica A And C Genomes via Database Interaction
             Wang

P380  Genetical Genomics Analysis Of Brassica napus Seed Composition Traits
             Sharma, Zhang, Boyle, Bender, Ramsay, Higgins, Williams, Meijaard, Sidebottom, Tallon, Relf-Eckstein, Sharpe, Parkin, and Fobert

P382  Genome-Wide Association Mapping Of Freezing Tolerance In Arabidopsis thaliana
             Willems, Vilhjalmsson, Borevitz, Bergelson, Koornneef, and Nordborg

P383  Evolution Of Alternative Splicing Patterns In Duplicated Genes Of Brassica napus
             Moshgabadi, and Adams

P385  Beyond Brassica rapa: Facilitating Brassica Research Through Whole Genome Sequencing
             Parkin, Koh, Bekkaoui, Links, Nowak, Wood, Haimanot, and Sharpe

P386  Comparative Analysis Of Brassica Genomes Using Second Generation Sequencing
             Duran, Stiller, Berkman, McKenzie, Batley, and Edwards

P387  Induction Of Regulatory Subfunctionalization And Neofunctionalization Between Duplicated Genes In Arabidopsis thaliana In Response To Abiotic Stresses
             Liu, and Adams

P388  Construction Of A Genetic Linkage Map Of Brassica rapa ssp. pekinensis Using A CKRI Population
             Wang, Choi, Ramchiary , and Lim

P389  A TILLING Service For Canola (Brassica napus)
             Gilchrist, Sharpe, Sidebottom, MacInnes, and Haughn

P391  Role Of Flavonoid Biosynthetic Pathway In Regulating Yellow Seed Coat Phenotypes In Canola (Brassica napus L.)
             Channabasavaradhya, Zheng, Sun, Kubik, Greene, Thompson, and Kumpatla

P392  Molecular Evolution Of psy Gene Family In Brassica napus
             Cardenas, Urbina, Gajardo, Navarro, Westermeyer, Iniguez-Luy, and Federico

P393  BrassEnsembl: Displaying Brassica Data Within The Ensembl Framework
             Displaying Brassica Data Within The Ensembl Framework

Poster: Legumes, Soybeans, Common Beans

P395  Quantitative Trait Loci (QTL) That Underlie Root And Shoot Traits In The Soybean [Glycine max (L.) Merr.] ‘Hartwig’ By ‘Flyer’ Recombinant Inbred Line (RIL) Population
             Ouertani, Washington, Lage, Lightfoot, and Kassem

P396  Fine Mapping Of The Soybean Aphid Resistance Gene Rag2 In Soybean PI 200538
             Kim, Hill, Hartman, Hyten, Hudson, and Diers

P397  Soybean QTLs For Common Cutworm Resistance
             Komatsu, Takahashi, Ohki, Sayama, Funatsuki, and Ishimoto

P398  Evaluation Of New Sources Of Soybean Aphid Resistance
             Bonin, Crull, Hill, Hartman, and Diers

P399  The Effect Of Two Seed Composition QTL On Agronomic Traits Of Soybean
             Pruski, Specht, and Diers

P400  Can Association Analysis Identify More QTLs For SDS In Soybean?
             Clark, and Kantartzi

P401  Soybean Seed Protein QTLs Mapping
             Phansak, Soonsuwan, Specht, Graef, Cregan, and Hyten

P402  Analysis Of Genetic Variation Of Phytochrome Genes In Soybean
             Tsubokura, Watanabe, Kanamori, Yamagata, Hideshima, Xia, Sato, Nakamoto, Yamanaka, Takahashi, Ishimoto, Anai, Tabata, Abe, Kaga, Katayose, and Harada

P403  Recombinants Screening And High Resolution Genetic Mapping By EcoTILLING To Identify Candidate Genes Associated With Soybean Cyst Nematode (SCN) Resistance In Soybean
             Liu, Yechel, Mitchum, Cianzio, and Meksem

P405  Identification Of QTL And Genes That Enhance Oil Content In Soybean
             ESKANDARI, ABLETT, and ISTVAN

P406  Differential Expression Of Small RNAs In Soybean
             Campos, Zabala, Jones, Tuteja, and Vodkin

P407  The Genetic Control Of Tolerance To Aluminum Toxicity In Soybean
             Sharma, and Sharma

P408  Quantitative Trait Loci (QTL) That Underlie Yield And Yield Components In The Soybean ‘Hartwig’ By ‘Flyer’ Recombinant Inbred Line Population
             Ouertani, Washington, Lage, Lightfoot, and Kassem

P409  RNA-Seq Atlas Of Glycine max
             Severin, Woody, Bolon, Joseph, Diers, Farmer, Weeks, Muehlbauer, Jin Tu, Xu, Nelson, Grant, Graham, Cannon, Specht, May, Vance, and Shoemaker

P411  Development Of Broad Spectrum SCN Resistance By Combining Genes From Different Resistance Sources
             Kim, Niblack, Hyten, and Diers

P412  Soybase, The USDA-ARS Soybean Genetics And Genomics Database
             Grant, Nelson, Cannon, and Shoemaker

P413  Characterization Of Candidate Genes For Salinity Tolerance In Tunisian Natural Populations Of Medicago truncatula
             Cordeiro, Cuellar-Ortiz, Friesen, Penmetsa, Nuzhdin, and Cook

P414  Aluminum Tolerance In A Medicago truncatula Core Collection
             Khu, Han, Motes, and Monteros

P415  Population Genomics Of Tunisian Medicago truncatula In Relation To Salinity Adaptation
             Friesen, Chang, Bendana, Vu, Cordeiro, Porter, Moriuchi, Penmetsa, von Wettberg, Mudge, Farmer, Woodward, May, Badri, Young, Strauss, Cook, and Nuzhdin

P416  A Medicago truncatula HapMap As A Platform For Exploring The Genetics Of Symbiosis
             HapMap Consortium

P417  The Medicago truncatula HapMap Project: Deep Coverage Sequencing Of 30 Inbred Lines Using Illumina’s Solexa Technology
             Branca, Paape, Briskine, Zhou, Wang, Denny, Mudge, Bharti, Farmer, May, Tiffin, and Young

P419  Developing Genomic Resources For Facilitating Molecular Breeding In Cultivated Groundnut (Arachis hypogaea L.)
             Varshney, MV, T, Koppolu, Khedikar, Senapathy, Bhimana, Vadez, Nigam, Upadhyaya, Isobe, He, Bertioli, Knapp, Cook, Hoisington, and Mike

P420  Characterization And High-Density Genetic Mapping Of The Peanut Transcriptome In Arachis duranensis, A Diploid Ancestor Of Cultivated Peanut
             Nagy, Tang, Okashah, Taylor, Guo, Khanal, Heesacker, Khalilian, Farmer, Carrasquilla-Garcia, Penmetsa, Cook, and Knapp

P421  Developing A Reference Genetic Map For Alfalfa And Mapping Of Biofuel Traits
             Wang, and Brummer

P422  Comparative Mapping In Intraspecific Populations Uncovers High Degree Of Macrosynteny Between A- And B-Genome Diploid Species Of Peanut
             Guo, Nagy, Khanal, and Knapp

P423  A First Insight Into Population Structure And Linkage Disequilibrium In Peanut, And Association Mapping Of Drought Tolerance-Related Traits In The US Peanut Minicore Collection
             Belamkar, Selvaraj, Ayers, Payton , Puppala, and Burow

P425  QTL Mining For Drought Avoidance Mechanisms At Flowering Time In Cowpea [Vigna unguiculata (L.) Walp]
             Diop, Chuieh, Muchero, Pottorff, Fenton, Cisse, Drabo, Roberts, Close, and Ehlers

P426  Mapping Of Genes For Resistance To Uromyces Vicia-Fabae In Lentil (Lens culinaris Medik.)
             Saha 1*, Sarker 2, Chen 1, Vandemark 1, and Muehlbauer 1

P427  Genetic Diversity Of Cowpea (Vigna unguiculata) In East Africa
             SARIAH

P428  Population Genetic Structure Based On SSR Markers In White Clover (Trifolium repens L.)
             Jin, Wei, Barrett, Woodfield, and Brummer

P429  Discovery Of Single Feature Polymorphisms In Pigeonpea Using Soybean Genome Arrays
             Varshney, Saxena, Cui, Walter, and Close

P430  Identifying Fusarium oxysporum f.sp. tracheiphilum Race 3 And Race 4 Resistance In Cowpea [Vigna unguiculata (L.) Walp] Using Genomic Resources.
             Pottorff, Ehlers, Close, and Roberts

P431  Segregation Distortion And Genetic Maps In Diploid Alfalfa
             Li, Wei, Wang, and Brummer

P432  Association Mapping Of Yield And Cell Wall Compositions In Tetraploid Alfalfa Breeding Population
             Wei, Li, Acharya, and Brummer

P433  454 Sequencing Of Lignin Biosynthesis Candidate Genes In Alfalfa
             Sherman-Broyles, Sakiroglu, Story, Doyle, and Brummer

P434  Development Of Genomic Resources For Marker-Assisted Selection In Lentil
             Bett, Vail, Vandenberg, Penmetsa, Farmer, Carrasquilla-Garcia, May, He, Bruening, and Cook

P435  Comparative Microsynteny Studies Of Peanut And Other Legumes, Emphasizing A Cluster Of NBS-LRR Disease Resistance Genes
             Ratnaparkhe, Nelson, Lemke, Kim, Auckland, Blair, Bertioli, Cook, and Paterson

Poster: Tomato, Potato, Pepper

P438  High-Resolution Mapping Of QTLs For Phytophthora infestans Resistance And Horticultural Traits In Tomato
             Haggard, Johnson, and St. Clair

P439  The Fine Mapping Of lyc12.1, A QTL That Significantly Increases Lycopene Content In Fresh Market Tomato (Solanum lycopersicum L.)
             Kinkade, and Foolad

P442  Genome-Wide Analysis Reveals Different Patterns Of Linkage Disequilibrium Among Market Classes Of Tomato
             Robbins, Sim, Yang, van Deynze, van der Knaap, Joobeur, and Francis

P443  Comparing Alleles Between Wild And Domesticated Tomato
             Baldo, Robertson, and Labate

P444  Fine Mapping Of A Begomovirus Resistance Gene
             Hutton, Scott, and Schuster

P445  QTL Validation Of Bacterial Spot Resistance In Tomato Based On Association Analysis In A Complex Breeding Population
             Sim, Wang, Robbins, Yang, and Francis

P446  Genetic Location Of Hypersensitive Resistance To Race T3 Of Bacterial Spot From Tomato Line Ha7981
             Wang, Robbins, Sim, Yang, and Francis

P448  Simple Sequence Repeats (SSR) Analysis Of Diversity And Deterogeneity Of Tomato Varieties From Eritrea
             Tedla

P450  Structural Analysis Of Gene-Rich Regions Of The Tomato Genome
             Sato, Shirasawa, Asamizu, Hirakawa, Nakamura, Kaneko, Isobe, and Tabata

P452  Ultra High Density EST-Based Maps Reveal Genome Differences Between C. frutescens And C. annuum.
             Hill, Ashrafi, Reyes Chin-Wo, Kozik, and Van Deynze

P454  Association Mapping Of Quantitative Agronomic Characters In Potato Based On Candidate Genes
             Li, Paulo, Strahwald, Lübeck, Hofferbert , Tacke, Junghans, and Gebhardt

P455  Emerging Reference Genome Sequence And The DArT Marker Platform Facilitate Comparative Mapping In Solanum
             Mann, Iorizzo, Gao, D’Agostino, Chiusano, Carputo, and Bradeen

P456  Whole Genome Profiling Of The Diploid Potato Clone RH89-039-16
             van der Vossen, Feron, van Oeveren, Jansen, Bogden, de Boer, Bachem, Prins, and van Eijk

P458  Whole Genome Profiling Of Solanum lycopersicum Heinz 1706
             van Schriek, Feron, van Oeveren, de Heer, daPonte, Jacobs-Oomen, Cariaso, Klein Lankhorst, van Ham, Bogden, Prins, van Eijk, and van Haaren

P460  Analysis Of Abundant sRNAs From Potato Leaves.
             McCue, and Fofanov

P463  New Genotype To Phenotype Models At The Intersection Of Genetics, Physiology And Statistics; Smart Tools For Prediction And Improvement Of Cropyield
             van Eeuwijk, Dieleman, Palloix, Vuylsteke, Glasbey, Barocsi, Magan Cañadas, Heuvelink, van der Heijden, van de Weg, Voorrips, and Bink

P464  Translational Genomics Of Meiotic Transcriptomes To Manipulate Genetic Recombination
             Tam, and Chetelat

P465  Translating Solanaceae Sequence Diversity And Trait Variation Into Applied Outcomes Through Integrative Research, Education, And Extension
             Douches, Buell, Francis, De Jong, Van Deynze, Mueller, Stone, and Zarka

P466  Characterization Of Various Repetitive Elements In Pepper (Capsicum annuum)
             Scheidt, and Prince

P467  Linkage Mapping In Capsicum annuum: Candidate Gene, CAPS, And COS Marker Mapping To Facilitate QTL Resolution And Comparative Mapping
             Lucas, Storey, Jorgensen, Hild, Brookshire, and Prince

P468  Complete Sequencing Of Pepper (C. annuum L.) Chloroplast Genome : Analysis Of Sequence Variations In Plastomes Of Solanaceous Species
             Kang, Jo, Park, Kim, Song, and Cheol-Goo

Poster: Fruit Trees

P470  A Sequence-Anchored Integrated Genetic Linkage Map For Apple, Malus X domestica Borkh
             Troggio, Zharkikh , Pindo, Baldi, Costa, Chagné , Micheletti, Coppola, Cestaro, Lasserre , Crowhurst , Bus , Magnago , Komjanc , Lespinasse , Salvi, Durel , Gardiner , and Velasco

P471  An Apple Genome Sequencing Initiative
             Dhingra , Schaeffer, Koepke, Jiwan, Krishnan, Wu, Kalyanaraman, Bumgarner, Durel, Chevreau, Lespinasse, Velasco, Rees, Rokhsar, and Bogden

P472  Application Of Apple Whole Genome Sequence To Enhance Mapping Of Resistance Gene Loci
             Gardiner, Bus, Bowatte, Bassett, Ranatunga, Chagne, Troggio, Pindo, Velasco, and Zarkikh

P473  Candidate Fire Blight (Erwinia amylovora) Resistance Genes In Malus
             Norelli, Bassett, Gardiner, Malnoy, Velasco, Borejsza-Wysocka, Aldwinckle, and Wisniewski

P474  Role Of HcrVf Genes And Promoters In Conferring Resistance To Apple Scab
             Joshi, Groenwold, Schaart, Schouten, Jacobsen, and Krens

P475  Comparative Gene Expression Of Architectural And Nutritional ESTs In Apple Root, Leaf And Stem Tissues
             Adhikary, Baldo, and Fazio

P476  QTL And Candidate Gene Mapping Of ‘Ripe Apple’ Aroma
             Wiedow, Chagne, Souleyre, Rowan, Hunt, Lambert, Cestare, Velasco, Volz, and Gardiner

P477  Mapping Malus sieversii: A Valuable Genetic Resource For Apple Breeding
             Lalli, Wisniewski, Norelli, Malnoy, Pindo, Fazio, Forsline, Aldwinckle, Gardiner, and Chagné

P478  Alignment Of Multiple Linkage Maps For The Apple Cultivar ‘Honeycrisp,’ And Comparison With Existing Apple Linkage Maps
             McKay, Luby, and Bradeen

P479  Identification Of Genes Involved In The Pathogenic Interaction Between An Antagonistic Strain Of Pichia fermentans And Peach Fruit
             Fiori, Scherm, Budroni, Wisniewski, and Migheli

P480  Cloning And Characterization Of Self-Compatible S Haplotypes In Peach
             Tao, Hanada, Gradziel, Dandekar, Wünsch, Yaegaki, and Yamaguchi

P481  SNP And QTL Discovery Of Peach Fruit Quality Genes
             Ahmad, Gradziel, Parfitt, Ogundiwin, Nicolet, Dhingra, Lin, Slaughter, and Crisosto

P482  Cloning Markers Around The Pillar Gene Useful For Marker-Assisted Breeding In Peach And Isolation Of The Gene
             Sajer, Scorza, Abbott, and Horn

P483  Preliminary Insights Into Genome-Wide Association Studies And Genomic Selection In Pear
             Iwata, Hayashi, Terakami, Takada, Sawamura, and Yamamoto

P484  Comparative Genome Mapping In Rosaceae Using COS Markers
             Bushakra, Gardiner, Symonds, Cabrera, van der Knaap, Pindo, Velasco, Troggio, and Chagné

P485  RosBREED: Enabling Marker-Assisted Breeding In Rosaceae
             Iezzoni, Peace, Main, Bassil, Luby, Yue, van de Weg, Weebadde, Fazio, Bink, Brown, Byrne, Clark, Crisosto, Davis, Evans, Finn, Gallardo, Gasic, Gradziel, Hancock, Jussaume, McCracken, Oraguzie, Reighard, Stone, Taylor, Wang, and Xu

P486  The Aconitate Hydratase Family From Citrus
             Terol, Soler, Talon, and Cercos

P487  Map-Based Ancestry Of Sweet Orange
             Roose, Federici, Mu, Kwok, and Vu

P488  Characterization Of Genomic Sequence For The Polyembryony Locus In Citrus By Expression And Association Analyses
             Mitsuo, Michiharu , Hiroshi , Keiko , Takehiko , Tomoko , Tokurou , and Masumi

P489  Analysis Of Allelic Differences In Structure And Expression Level Of ZEP Gene In Citrus
             Sugiyama, Ikoma, Fujii, Shimada, Endo, Shimizu, and Omura

P490  Expression And Organization Of Carotenoid Biosynthesis Genes In Sweet Orange
             Chen, Costa, Yu, Moore, and Gmitter Jr.

P491  Development Of A “Functional” Genetic Map Of Cultivated Strawberry (Fragaria X Ananassa) For QTL Analysis Of Agronomical And Fruit Quality Traits.
             Zorrilla-Fontanesi, Cabeza, Domínguez, Medina, Valpuesta, Denoyes-Rothan, Sánchez-Sevilla, and Amaya

P492  Characterization Of MADS-Box Family Members Involved In Flower And Fruit Development In Citrus spp.
             Araújo, and Dornelas

P493  Identification Of The Genetic Region Including Astringency (AST) Locus In Hexaploid Persimmon (Diospyros kaki Thunb.) By Positional Cloning In A Diploid Relative, D. lotus
             Tsujimoto, Akagi, Kono, Mitani, and Yonemori

P494  Genomic Regions Involved In Important Agronomic Traits For Sweet Cherry (Prunus avium) Breeding
             Quero-García, Fodor, Reignier, Joly, Tauzin, Fouilhaux, and Dirlewanger

P495  Generation Of Genomic Tools For The Study Of Olive Tree
             González-Plaza, Sánchez-Sevilla, Muñoz-Mérida, Domínguez, Trelles, Bjelaj, De la Rosa, Botella, Valpuesta, and Beuzón

P496  Grapevine miRNAs: Towards A Structural And Functional Characterization
             Mica, Bertolini, Piccolo, Lacourieux, Horner, and Pè

P497  Low Temperature-Induced Down-Regulation Of The MADS-Box Genes In Endodormant Buds Of Japanese Apricot (Prunus mume)
             Jotatsu, Ooka, Sasaki, Yamane, Tao, and Yonemori

P498  in vitro Variability Of Eleven Grapevine Rootstocks (Vitis spp.)
             Cançado, Ribeiro, Rocha, Vieira-Neto, SantAna, Pasqual, and Borem

P499  A Genetically Anchored Physical Map Of The Cacao Genome
             Blackmon, Saski, Schnell, Motamayor, and Kuhn

P500  Genetic Diversity In Turkish Olive Genbank Resource Revealed By RAPD, SSR And AFLP Markers.
             Kaya, Kaya, Sahin, Sefer, Arsel, Ozisik, and Tanyolac

P501  Methylation-Sensitive AFLP Markers To Investigate Drought-Stress Response In Montepulciano And Sangiovese Cultivars
             Marconi, Raggi, Palliotti, Napolitano, and Albertini

P502  Characterization Of Reproductive Self-Compatibility In Theobroma cacao L.
             Royaert, Cariaga, Freeman, Phillips, Lopes, Brown, Kuhn, Schnell, and Motamayor

P503  Construction Of A Genetic Linkage Map Of Red Raspberry (Rubus idaeus L.): Quantitative Analysis Of Heat Tolerance, Prickle Density And Growth Habit
             Molina-Bravo, Fernandez, and Sosinski

P504  Sweet Cherry Genomics: Cherry Genome Sequencing Facilitates Investigations Into Fruitlet Abscission And Rootstock-Scion Interactions Controlling Floral Bud Number
             Koepke, Schaeffer, Hendrickson, Jiwan, Dumcan, Krishnan, Kalyanaraman, Harper, Whiting, Meisel, and Dhingra

P505  SNP Analysis In Turkish Olive Genbank Resources
             Akkale, and Tanyolac

P506  Generating Genomic Tools For Blueberry Improvement- A Progress Update
             Rowland, Alkharouf, Bassil, Bell, Buck, Drummond, Finn, Graham, and Hancock

Poster: Insects

P508  Development Of The International Psyllid Genome Consortium
             Bextine, and Hunter

P509  MicroRNA Regulation Of Host Plant Resistance To Aphids
             Sattar, Anstead, Jagadeeswaran, Sunkar, and Thompson

P510  Identification Of QTL In Soybean Underlying Resistance To Herbivory By Japanese Beetles (Popillia japonica, Newman)
             Yesudas, Sharma, and Lightfoot

Poster: Forest Trees

P513  Populus trichocarpa Epigenomics: Analysis Of The Developmental Poplar Methylome
             Vining, Pomraning, Wilhelm, Dharmawardhana, Priest, Shevchenko, Ma, Zhu, Etherington, Mockler, Freitag, and Strauss

P514  Functional Characterization Of cpg13, A Candidate Gene For A Pleiotropic QTL Affecting Carbon Partitioning And Growth In Populus
             Novaes, O¡¯Brien, Dervinis, Boaventura-Novaes, Drost, Osorio, Koch, Peter, and Kirst

P515  Phylogenomics Of The CYP74 Cytochrome P450 Gene Family In Populus And Other Plants
             Herr, Frost, and Carlson

P516  Structure And Variation Of Lignin β–Glucosidase Genes In Pines, And Phylogeny Of The GH1 Family In Plants
             Sengupta, Liu, dePamphilis, and Carlson

P517  Detection Of Candidate Genes For Resistance To Pitch Canker (Fusarium circinatum) In Loblolly Pine (Pinus taeda L) Using Association Studies On Two Pine Populations
             Quesada, Huber, and Davis

P518  Gene Expression Profiling In Pinus thunbergii Defence Responses To Nematode Infection.
             Hirao, Isoda, Toru, and Watanabe

P520  Progress On Eucalyptus BAC Libraries Characterization
             Paiva, Vautrin, Prat, Santos, Araújo, Fonseca, Gion, Fevereiro, Freitas, Marques, Berges, and Grima-Pettenati

P521  High-Density Linkage Map In Eucalyptus globulus Constructed With 500+ F2 Progenies Using Diversity Array Technology (DArT) And Microsatellite Markers
             Hudson, Freeman, Faria, Grattapaglia, Kilian, Potts, and Vaillancourt

P522  A High-Density Consensus Genetic Linkage Map Of Eucalyptus grandis, E. urophylla And Their F1 Hybrid Based On DArT And Microsatellite Markers And An Interspecific F2 Pseudo-Backcross Pedigree
             Kullan, Mizrachi, Jones, Kanzler, Bayley, and Myburg

P523  Forest Health Initiative For American Chestnut Restoration
             Carlson, Abbott, Anagnostakis, Baier, Barakat, James, Islam-Faridi, Ficklin, Hebard, Kubisiak, Maynard, Merkle, Miller, Nairn, Powell, Schuster, Tomsho, Wagner, and Nelson

P524  Effects Of Marker Numbers And Population Parameters On The Accuracy Of Predicted Breeding Values In Forest Trees
             Isik, and Whetten

P526  Genomic Resources For Black Cherry
             Orendovici-Best, Barakat, Steiner, Wagner, and Carlson

P528  Organization Of The Chromosome Region Containing A Floricaula/Leafy Gene In Liriodendron
             Liang, Barakat, and Carlson

P529  MicroRNAs In Norway Spruce And Evidence Of Their Regulation Of Epigenetic Memory Of Maternal Embryogenesis
             Yakovlev, Fossdal , and Johnsen

P530  Physical Mapping Of Chestnut Genome: A Genome Resource For Fagaceae And Other Tree Species
             Fang, Blackmon, Ficklin, Cheng, Staton, Henry, Monsanto, Saski, Atkins, Georgi, Tomkins, and Abbott

P531  Population Structure And Genetic Diversity In Acacia senegal Complex Of Species As Revealed By SSR Markers
             Assoumane, Favreau, Zoubeirou, Bezançon, Saadou, and Verhaegen

Poster: Cattle

P533  Genome-Wide Association Scan To Map Female Fertility Traits In Finnish Ayrshire
             Schulman, Sahana, Iso-Touru, McKay, Schnabel, Lund, Taylor, and Vilkki

P534  Identification Of Candidate Genes For Tissue Infection Of Mycobacterium avium subspecies paratuberculosis Using Single Nucleotide Polymorphism-Based Gene-Set Enrichment Analysis (GSEA-SNP)
             Settles, Taylor, Whitlock, and Neibergs

P537  QTL, Hypothalamic-Transcriptome, And Candidate Gene Query Suggest Bovine Chromosome 2 Influences Heifer Pregnancy
             Thomas, Peters, Kazilkaya, Garrick, Fernando, Reecy, Hu, Schilkey, Weaber, and Silver

P538  Estimation Of Genomic Inbreeding Coefficients Using BovineSNP50 Genotypes From U.S. Jersey Cattle
             Kim, Van Tassell, and Sonstegard

P539  Identification Of Candidate QTNs For Milk Production Traits In A QTL Critical Region Of Bta3 Using Sequence Capture Technology
             Cohen-Zinder, Donthu, Larkin, and Lewin

P540  A Genome Scan For QTL Affecting Milk Somatic Cell Count In Israeli And Italian Holstein Cows By Means Selective DNA Pooling With Multiple Marker Mapping
             Tal-Stein, Fontanesi, Dolezal, Scotti, Bagnato, Russo, Canavesi, Friedmann, Soller, and Lipkin

P541  Effects Of Bovine ß-Casein Protein Variant I On Milk Composition
             Visker, Dibbits, Kinders, Van Valenberg, Van Arendonk, and Bovenhuis

P542  X Chromosome SNPs Were Heavily Involved In Epistasis Effects Of Net Merit Component Traits In Contemporary U.S. Holstein Cows
             Ma, Sonstegard, Cole, Wiggans, Crooker, Van Tassell, Yang, Matukumalli, and Da

P543  A Genome Wide Association Study Using Selective DNA Pooling Identifies Candidate Markers For Fertility In Holstein Cattle
             Huang, Kirkpatrick, Rosa, and Khatib

P544  Fine Mapping QTL Affecting Daughter Fertility In Canadian Holstein Cattle Using 10K Tagged SNP Markers
             Li, Marques, Sargolzaei, Schenkel, Stothard, and Wang

P545  cDNA Cloning, Tissue Expression And Methylation Analysis Of Bovine MAGEL2 Gene.
             Imumorin, Jain, De Donato, Bates, and Hansen

P546  Selection Signatures In Brown, Simmenthal And Holstein Friesian Italian Cattle Breeds Unravelled By A Illumina 54000 SNPs Panel
             Mancini, Prosperini, Chillemi, Ajmone-Marsan, Valentini, and Pariset

P547  High Resolution QTL Map Of Body Conformation Traits From Genome-Wide Association Analysis In Contemporary U.S. Holstein Cows
             Wiggans, Ma, Sonstegard, Cole, Crooker, Van Tassell, Yang, Matukumalli, and Da

P548  Discovery Of Novel Genetic Networks Associated With 19 Economically Important Traits In Beef Cattle
             Jiang, Michal, Chen, Daniels, Kunej, Garcia, Gaskins, Busboom, Alexander, Wright Jr., and MacNeil

P549  Selection Signatures In Trypano-Tolerant African Cattle Breeds.
             Stella, Hanotte, and Boettcher

P550  SNP-Based Parentage Assignment With Different Software/Programs In Beef Cattle
             Pan, Michal, Gaskins, Reeves, Bauck, and Jiang

P551  Effect Of Follistatin On Meat Yield Traits In Cattle
             Novianti, Pitchford, and Bottema

P552  A Deletion Mutation In KRT71 Is Associated With Congenital Hypotrichosis In Hereford Cattle
             Markey, Taylor, Schnabel, McKay, McClure, and Beever

P553  Evaluation Of Two Positional Candidate Genes On BTA14 For Association With Dry Matter Intake In Beef Cattle
             Lindholm-Perry, Kuehn, Smith, Freetly, and Snelling

P554  Genome-Wide Association Analysis For Ultrasound And Carcass Merit Traits In Beef Cattle
             Nalaila, Li, Sherman, Nkrumah, Mujibi, Moore, and Wang

P555  ZNF280BY And PRAMEY: Autosome Originated Y Chromosome Gene Families In Cattle
             Chang, Yang, Yasue, and Liu

P556  Evaluation Of Model Predicted Feed Intake Data For Genetic Analysis And QTL Discovery In Beef Cattle
             Rolf, Taylor, Schnabel, McKay, McClure, and Weaber

P558  Bayesian QTL Inference From Whole Genome Growth And Carcass Analyses In Brangus Heifers
             Peters, Kizilkaya, Garrick, Fernando, Reecy, Weaber, Silver, and Thomas

P559  Discovery Of A Single Nucleotide Polymorphism Haplotype In The μ-Calpain And Calpastatin Genes With Improved Prediction Of Beef Tenderness
             Taxis, McClure, Ramey , McKay, Rolf, Weaber, Taylor, and Schnabel

P560  Identification Of Genetic Regions Associated With Tolerance And Infection To Johne’s Disease In Cattle Using A Fine-Mapping Approach
             Zanella, Whitlock, and Neibergs

P561  Mapping Of The Locus Causing “Tipper” Syndrome In Buelingo Cattle
             Marron, Peeler, and Beever

P562  Complete Haplotype Reconstruction Of Two Champion Bulls By Whole Genome Resequencing
             Larkin, Cohen-Zinder, Goddard, Hernandez, Wright, Hetrick, Boucek, Bachman, Thimmapuram, Harkins, McCague, and Lewin

P563  Effects Of Population Stratification On GWAS In Livestock Populations Assumed To Be Homogenous
             Decker, Vasco, McKay, Rolf, Taxis, Chapple, Gregg, Kim, Schnabel, and Taylor

P564  The Accuracy Of Genomic Selection Due To Linkage Analysis Information And Due To Linkage Disequilibrium
             Luan, Woolliams, and Meuwissen

P565  High Resolution QTL Map Of Net Merit Component Traits And Calving Traits From Genome-Wide Association Analysis In Contemporary U.S. Holstein Cows
             Cole, Sonstegard, Ma, Wiggans, Crooker, Van Tassell, Yang, Matukumalli, and Da

Poster: Sheep

P567  High-Resolution RH Mapping Of QTL Regions For Parasite Resistance In Sheep
             Hadfield, Miller, Wu, and Cockett

P568  Systems Biology Approach To Identification Of Candidate Genes From Sheep QTL Regions
             Sayre

P569  Constructing A High-Resolution RH Scaffold That Contributes To The Ovine Whole Genome Assembly
             Wu, Goldammer, Moore, Hadfield, Jann, Maddox, Dalrymple, Kijas, McEwan, and Cockett

P570  Whole Genome Association With Susceptibility To Infectious Disease: Ovine Progressive Pneumonia/Maedi-Visna Virus
             White, Mousel, Knowles, Lewis, and Herrmann-Hoesing

P571  Association Analysis Of A CCR5 Variant With Ewe Lifetime Production
             Mousel, White, and Herrmann-Hoesing

P572  Microphthalmia In Texel Sheep Is Associated With A Missense Mutation In The Paired-Like Homeodomain 3 (PITX3) Gene
             Becker, Tetens, Brunner, Bürstel, Ganter, Kijas, and Drögemüller

P573  Genotypic Screening For Melatonin Receptor Gene 1A Polymorphism In Rafter 7 Merino Ewes
             Wuliji, Qi, Li, Chen, and Filbin

P574  The Use Of Illumina 50K BeadChip And Selection Of Extremes For Mapping QTL Affecting Fiber Diameter In Sheep
             Goher, Rauw, Thain, and Gomez-Raya

P575  An RH-Anchored Parasite Resistance QTL Map For Sheep
             Wu, Hadfield, and Cockett

P576  Evidence Of A Molecular Circadian Clock In The Ovine Periovulatory Ovary.
             Blake, Martin, Forde, Evans, and Murphy

P578  Melatonin Receptor 1 A Gene Polymorphisms To MnlI, RsaI And Nucleotide Mutations In Rafter 7 Merino Ewes
             Qi, Wuliji, Chen, and Shi

P579  A Genome Wide Association Study And Fine Mapping For Chondrodysplasia Of Texel Sheep
             Zhao, Blair, Onteru, Piripi, Rothschild, Thompson, and Garrick

Poster: Poultry

P581  Identification Of Chromosomal Regions Affecting Sperm Mobility In The Rooster.
             Munnaluri, Froman, and Rhoads

P582  Genome-Wide SNP Association With C. jejuni Colonization In Chickens
             Li, Chou, Swaggerty, Kogut, Pevzner, and Zhou

P583  Genetic Characterization Of Two Italian Poultry Breeds With SSR Markers
             Ceccobelli, Lasagna, Landi, Ciocchetti, Albertini, and Sarti

P584  Integrated Analysis Of MicroRNAs Expressions And mRNA Transcription In Avian Influenza Virus Infected Chicken Lung
             Wang, Brahmakshatriya, Lupiani, Reddy, Zhu, Gunaratne, Liu, Trakooljul, Okimoto, and Zhou

P585  Identification Of Microsatellite Markers Associated With Ascites Susceptibility In Commercial Broilers
             Krishnamoorthy, Rhoads, and Anthony

P586  Genome-Wide Association Study Of Pulmonary Hypertension Syndrome In Chicken
             Elferink, Closter , van As, Bovenhuis, Vereijken, Veninga , Crooijmans, and Groenen

P587  Application Of Massive Parallel Sequencing For Inferring Genome-Wide Nucleotide Diversity And Signatures Of Selection In Chicken
             Megens, Zare, Amaral, Crooijmans, Ferretti, Ramos-Onsins, Perez-Enciso, and Groenen

P588  SNP Association Analysis Of Two Chicken Advanced Intercross Lines For Growth
             Redmond, and Lamont

P589  Using Quantitative PCR To Investigate Three Candidate Genes Related To Pulmonary Hypertension In The Chicken
             Al_Rubaye, Anthony, Wideman, and Rhoads

P590  Genetic Variants Of The IGF1 And IGF2 Genes Are Associated With Feed Efficiency In Poultry
             Aggrey, McMurtry, and Karnuah

P591  Effects Of Heat Stress On Expression Of Ryanodine Receptors, Serca1, And Calsequestrin In Turkey Breast Muscle From Two Genetic Lines
             Sporer, Zhou, Malila, Booren, Linz, and Strasburg

P592  Alpha-Class Glutathione S-Transferases In Wild Turkeys (Meleagris gallopavo): Molecular And Biochemical Characterization And Role In Resistance To Aflatoxin B1
             Kim, Croasdell, Bunderson, Reed, Smith, Coulombe, and Jr.

P593  Genetic Variability Of The MHC Region In Free-Run/Free-Range Chicken Flocks Estimated Using The LEI0258 Microsatellite Marker
             Izadi, Fulton, Ritland, and Cheng

P594  Genetic Analysis Of Signaling Genes For Affects On Egg Production In The Domestic Chicken (Gallus gallus)
             Flack, and Rhoads

Poster: Swine

P596  Study On The Phylogeny Of Pig MyoG Gene In 10 Different Genetic Original Breeds
             Zhu

P597  Detection Of QTL Influencing Antibody And Interferon Production In Pigs
             Uddin, Große-Brinkhaus, Tesfaye, Hölker , Jüngst, Tholen, Phatsara, Schellander, and LOOFT

P598  Detecting Imprinted Genes In The Pig Genome By High-Throughput cDNA-sequencing (RNA-seq)
             Madsen, Crooijmans, Rund , Schook, and Groenen

P599  Segmental Duplications In Pig Genome
             Du, Gorbach, Hu, and Rothschild

P600  Comparative Assessment Of The Pig, Mouse And Human Genomes; A Structural And Functional Analysis Of Genes Involved In Immunity.
             Dawson

P601  Identification Of Polymorphisms Controlling Recessive White Coat Color In Pigs
             Wagner, and Beever

P602  Linkage Disequilibrium Decay In Commercial Pigs
             Deeb, Forni, and Cleveland

P603  Establishment Of A Resource Population Of SLA Haplotype-Defined Korean Native Pigs
             Cho, Ho, Lee, Cho, Lee, Ko, Park, Smith, Jeon, and Lee

P604  A High Resolution Porcine Radiation Hybrid Map With 10,000 Markers
             Liu, Yasue, Farmer, Crow, Ma, Eyer, Beever, Schook, Retzel, and Beattie

P605  Whole-Genome Association Analysis On Body Composition And Feet And Leg Structure Soundness Traits In The Pig
             Fan, Onteru, Garrick, Stalder, and Rothschild

P606  FADS2 Polymorphism Affect Arachidonic Acid Content In San Daniele Dry Cured Ham
             Renaville, Piasentier, Vitale, and Prandi

P607  Allele-Specific Transcription Factor Binding In Pig Calpastatin Promoter Regions
             Nonneman, Lindholm-Perry, Shackelford, King, Wheeler, and Rohrer

P608  Identification And Characterization Of Kidney miRNAs In Different Pig Breeds
             Timoneda, Balcells, Francino, Vera, Egea, Castelló, Tomás, Núñez, and Sanchez

P609  Structural And Copy Number Variation In The Pig Genome
             Tang, Li, Finlayson, Smith, Lu, Langford, and Archibald

P610  Porcine S100A8 And S100A9 : Critical Roles In Response To Haemophilus parasuis Infection And Their Molecular Characterization
             Chen, Liu, Cheng, Li , Cao, Wu, Lunney, and Zhao

P611  Association Study Of Candidate Genes For Porcine Carcass Traits
             Guiatti, Sgorlon, and Stefanon

P612  mRNA Transcripts Are Expressed Differently In in vivo Vs. in vitro Cultured Porcine Pre-Implantation Embryos
             Bauer, Spate, Isom, Reike, Spollen, Blake, Murphy, and Prather

P613  PRRS Host Genetics Consortium: Current Progress.
             Lunney, Steibel, Reecy, Rothschild , Kerrigan, Trible, and Rowland

P614  Genetic Analysis Of Residual Feed Intake And Its Components Based On The PorcineSNP60 BeadChip
             Gorbach, Cai, Dekkers, Young, Garrick, Fernando, and Rothschild

P615  Genome-Wide Analyses For Pig Reproductive Traits Using The PorcineSNP60 BeadChip
             Onteru, Fan, Garrick, Stalder, and Rothschild

P616  Integrated Data Mining Based On Porcine Mirna And Expression Chip Metadata For Discovering Novel Regulatory Pathways Of Porcine Muscle Development
             Cao, Li , and Zhao

P617  Genome-Wide Association Study For Porcine Reproductive And Respiratory Syndrome (PRRS) Viremia In Commercial Pigs
             Botti, Stella, Biffani, Caprera, Anselmo, Lazzari, Bishop, and Giuffra

Poster: Equine

P619  Generation Of A Consensus Protein-Coding Equine Gene Set
             Coleman, Zeng, Miller, Klein, Troedsson, Antczak, Liu, and MacLeod

P620  Whole Genome Association Mapping Of Recurrent Exertional Rhabdomyolysis In Thoroughbred Horses
             Fritz, Mickelson, McCue, Rendahl, Lucio, and Valberg

P621  Genetics Of Extreme Lordosis In Saddlebred Horses
             Cook, and Bailey

P622  Genome-Wide Association Analyses For Susceptibility To Osteochondrosis Dissecans (OCD) In Standardbred Trotters
             Petersen, Rendahl, Mickelson, Ralston, and McCue

P623  Evidence That Circadian Rhythms Regulate Muscle Function In A Large Agricultural Species – The Horse.
             Murphy, Martin, Katz, Blake, and Elliott

P624  Genomic Prediction Of Risk For Osteochondrosis In The Thoroughbred Horse
             Corbin, Blott, Vaudin , Swinburne, McIlwraith, Bramlage, and Woolliams

P625  Genetic Diversity In Belgian Draught Horses As Revealed By Pedigree Analysis And Molecular Marker Data
             Janssens, Stinckens , Peeters, and Buys

P626  Skeletal Muscle Gene Expression In Horses With Type 1 Polysaccharide Storage Myopathy
             Anderson, Rendahl, Gustafson-Seabury, Kachroo, Chowdhary, Schultz, Valberg, Mickelson, and McCue

P627  A Rapid And Simple Method For SNP Genotyping In The Domestic Horse
             Au-Young, Marra, and Webster

P628  XY Sex Reversal In Mares
             McGee, Lear, Graves, and Bailey

P629  Evaluation Of Genetic Relationship With Equine SNP50 Chip In Maremmano Breed
             Capomaccio, Pieramati, Felicetti, Giontella, Distl, Silvestrelli, Katia, Castro, and Verini-Supplizi

P630  Identification Of Serologically Defined Equine Major Histocompatibility Complex (MHC) Haplotypes Using An Intra-MHC Microsatellite Panel
             Tseng, Miller, and Antczak

P631  Genome Wide Association Study Of Equine Insect Bite Hypersensitivity
             Andersson, Eriksson, Broström, Frey, Sundquist, Mikko, and Lindgren

P632  Differential Gene Expression In Equine Tendon As A Function Of Maturation And Loading
             Detlefsen, Patterson-Kane, and MacLeod

P633  A Population Genomics Approach To Explore The Molecular Basis For Athletic Performance Traits In North Swedish Trotters
             Axelsson, Mikko, Smedstad, Jacobsson, Ringholm, Roed, Andersson, and Lindgren

Poster: Aquaculture

P636  Evidence Of Major Genes Affecting Bacterial Cold Water Disease Resistance In Rainbow Trout Using Bayesian Methods Of Complex Segregation Analysis
             Vallejo, Wiens, Rexroad III, Welch, Evenhuis, Leeds, Janss, and Palti

P637  SNP Discovery In Atlantic Salmon (Salmo salar) Genes
             Andreassen, Lunner, and Hoyheim

P638  Structure And Expression Of Calreticulin And Ceruloplasmin Genes In Channel Catfish, Ictalurus punctatus
             Liu, Wang, Liu, Kucuktas, Peatman, and Liu

P639  Searching For IPN-Specific Gene Expression Profiles In Salmo salar Using Susceptible And Resistant Strains Challenged With The Infectious Pancreatic Necrosis Virus (IPNV)
             Reyes-López, Romeo, Roher, Imarai, Boltaña, Mackenzie, and Vidal

P640  Construction Of A SNP Genetic Map And de novo Sequencing For Pacific White Shrimp
             Du, and Rothschild

P641  Applying Genomics To The Analysis Of Traits In Atlantic Cod
             Bowman, Borza, Higgins, Hubert, Simpson, Stone, Hastings, Vander Voort, Garber, Booman, Rise, Trippel, Rise, and Robinson

P644  Molecular Characterization And Expression Analysis Of Importin aacute Family Genes In Rainbow Trout
             Ma, Rexroad III, and Yao

P645  Remnants Of Transposable Elements In The Shrimp Genome: Potential Utility For Species Differentiation And Traceability
             Alcivar-Warren, Hake, Alcivar, Alcivar, and Warren

P646  Determination Of Levels And Extent Of Linkage Disequilibrium In Linkage Group VIII In Four Chilean Populations Of Atlantic Salmon (Salmo salar)
             Yáñez, Jedlicki, Beristain, Gajardo, Lubieniecki, Davidson, and Martinez

P647  A First Generation Integrated Physical And Genetic Map Of The Rainbow Trout Genome
             Palti, Luo, Genet, Hu, Yuo, Vallejo, and Rexroad III

P648  Mitochondrial DNA, Phenotypic And Morphological Markers For Bay Scallop Stock Identification And Diversity In Enhancement And Restoration Studies
             Stiles, Choromanski, Jeffress, Kerk, and Caccone

P649  Molecular Characterization Of The MuRF Gene Family: Potential Role In Rainbow Trout Muscle Degradation
             Wang, Salem, Kenney, Weber, Rexroad III, and Yao

P650  Relative Contribution And Genetic Parameters Of White Bass Fingerlings Reared In Communal Ponds.
             Fuller, and McEntire

P651  Establishment Of Pedigrees And Measurement Of Reproductive Success In Channel Catfish (Ictalurus punctatus) Communally Mated In Earthen Ponds.
             Waldbieser, Bosworth, and Quiniou

P652  Genome Size Estimation And Karyotype Composition Of The South African Abalone Haliotis midae
             Franchini, Slabbert , Van der Merwe, Roux, and Roodt-Wilding

P654  Microarray Analysis For Developmental And Pathogenic Gene Regulation In The Fish Protozoan Parasite Ichthyophthirius multifiliis
             Abernathy, Xu, Peatman, Kucuktas, Klesius, and Liu

P655  Identification And Criteria-Based Screening Of Putative SNP Markers For A High-Density SNP Chip For Catfish
             Wang, Liu, Jiang, Liu, Lu, Peatman, Kucuktas, and Liu

P656  Identification And Characterization Of Catfish Full-Length cDNAs
             Lee, Chen, Wang, Jiang, Liu, Liu, Abernathy, Peatman, Kucuktas, and Liu

P657  Sequence Divergence Of Heat Shock Proteins Within And Among Three Oncorhynchids
             Narum, and Campbell

Poster: Natural Populations

P660  New Genomic Data Illuminates Young Lineages
             Knaus, Cronn, Liston, Pilgrim, and Schwartz

P661  Assembling A “Hot Hand” For Potato-Breeding Poker: Starch Phosphorylase Natural Alleles
             Nader-Nieto, Fischer, and Gebhardt

P662  Genome-Wide Deconstruction Of Local Adaptation Between Ecological Races Of The Yellow Monkeyflower, Mimulus guttatus
             Lowry

P663  A Genomic Study On Stinkhorn Mushroom
             Sangireddy, Zhang, and Zhou

P665  Multiplexed Microsatellite Recovery Using Massively Parallel Sequencing
             Jennings, Mullins, Knaus, Cronn, and Haig

Poster: Other Species

P667  Probing Phenotypic And Genotypic Diversity Underlying Plant Architectural Traits In Ryegrass
             Ruttink, Saracutu, Roldán-Ruiz , and Rohde

P668  Characterizing The Genome Of Wild Relatives Of Limnanthes alba (Meadowfoam) Using Massively Parallel Sequencing
             Meyers, and Liston

P669  Eco-Turf: Water-Use Efficient Turfgrasses From Australian Biodiversity
             Holton, Cremer, Jewell, Innes, Loch, Lambrides, and Godwin

P670  QTL Mapping For Fiber Length And Fiber Strength In Natural Colored Cotton (Gossypium hirsutum L.)
             Altan, and Tanyolac

P671  Assessment Of Introgression Lines With Exotic Genome For Fiber Quality Improvement Of Upland Cotton (Gossypium hirsutum L.)
             Kumar, Singh, Shen, Paterson, and Chee

P672  Genome Structure, Transmission Genetics, And Fiber QTLs Of Gossypium mustelinum
             Wang, Liu, Zhuang, Lubbers, May, Zhang, Auckland, Rong, Zhang, Paterson, and Chee

P673  Towards A Super-Dense Integrated Map Of The Cotton Genome
             Zhang, Huang, Zhang, Liu, Scheuring, Stelly, Smith, and Hague

P674  Molecular Characterization Of Cannabis sativa L.
             Carnevali, Massetti, Marconi, Raggi, Coletti, Lancia, Severini, Torricelli, and Albertini

P675  Mapping And Identification Of QTL Controlling Fiber Color Genes In Cotton
             Filiz , and Tanyolac

P676  A Draft Physical Map Of D Genome Cotton
             Lin, Pierce, Estill, Bowers, Compton, Nelson, Lemke, Tang, Wang, Grover, Kudrna, Golser, Yu, Collura, Wissotski, Braidotti, Zuccolo, Wing, Wendel, and Paterson

P677  LD Mapping For Melon Fruit Related Traits
             Tomason, Nimmakayala, Vajja, Tomason, and Reddy

P678  Genetic Characterization Of Interspecific Breakdown In Cucurbita spp.
             Ponniah, Tomason, Vajja, Kerdieh, Reddy, and Nimmakayala

P679  Population Structure And Association Mapping In Watermelon Heirloom Collections
             Nimmakayala, Tomason, Sokolova, Vajja, Ponniah, and Reddy

P680  Mapping QTL In Synthetic Tetraploid Population Of Watermelon
             Rahman, Reddy, Tomason, Ponniah, Vajja, Reddy, and Nimmakayala

P681  Using Genomics For Fast Track Breeding In Artemisia annua (Compositae)
             Graham, Besser, Blumer, Branigan, Czechowski, Elias, Guterman, Harvey, Isaac, k, Larson, Li, Owens, Pawson, Penfield, Rae, Rathbone, Ross, Smallwood, Segura, Townsend, Vyas, Winzer, and Bowles

P682  Association Mapping In Sunflower
             Ellis, and Burke

P683  Identification And Utility Of Markers Linked To The Zucchini Yellow Mosaic Virus Resistance Gene In Watermelon.
             Harris, Ling, Levi, and Wechter

P684  Identification Of cDNA Markers For Cold Tolerance In Hellebores Niger Flowers
             Liu, and Sauve

P685  The Development And Mapping Of Four New Genetic Markers For Gender Determination In Hop (Humulus lupulus L).
             Buck, Carlisle, Wiedow , Graham, Gardiner, and Beatson

P686  The Long-Range Organization Of Beta Centromeres
             Fiege, and Schmidt

P687  Characterization Of Insertional Mutants In Fragaria vesca
             Holt, Ruiz-Rojas, Dan, Shulaev, and Veilleux

P688  SSR Marker-Based Map Of Diploid Banana
             NKOUAYA MBANJO, LORENZEN, TCHOUMBOUGNANG , DOCHEZ , and NYINE

P689  Progress On Genetic Mapping And Genomics For Korean Ginseng
             Kim, Choi, Park, Kim, Lee, Ju Yeon, Lee, Karki, Perumal, Wu, Nur Kholilatul, Choi, Ahn, and Yang

P690  Genetic Diversity In The Karst Shepherd Population
             Razpet, Butkovic, Kunej, and DOVC

P691  Sequence The Plant Whole Genome For Plant Improvement
             Li, Yang, and Wang

P692  Characterization Of Fruit Quality Genes For Health And Colour Through Marker-Assisted Selection
             Tsang, Fraser, Datson, de Silva, McNeilage, Atkinson, Nieuwenhuizen, Allan, Beatson, Espley, and Montefiori

P693  Phylogenetic Analysis Of Galanthus spp By AFLP Markers Distributed In Turkey
             Altan, Uzan, Sarikaya, Kaya, Somer, Onur, and Tanyolac

P694  Building Genomic Tools In Deer (Cervus elaphus): Sequences, Maps And SNP Chips
             Fisher, Bixley, Brauning, McEwan, and Archer

P695  The Characterization Of Two Diverse Magnetotactic Bacteria: LEMS And MMS-1
             Pickard, Howse, and Bazylinski

P696  Molecular Diversity Of The Ruminal Bacteria Of Korean Black Goat
             Lee, Lee, Park, Kim, and Kim

P697  A High-Density Canine 170,000 SNP Array: Validation In 26 Breeds Using DNA From Blood And Buccal Whole Genome Amplified Samples
             Hansen, Webster, Sigurdsson, André, Lawley, Rosengren-Pielberg, Bannasch, Lohi, Fredholm, Thompson, Lindblad-Toh, and LUPA Consortium

P698  The Genomic Analysis Of Kit In White Spotted Cats: Characterization Of The Birman Gloves Phenotype
             Gandolfi, Bach, Beresford, Longeri, and Lyons

Poster: Transformation

P701  RNAi Mediated Viral Resistance In Transgenic Wheat
             Cruz, Fellers, and Trick

P702  Bioactive Beads-Mediated Transformation Of Rice With Large DNA Fragments Containing Aegilops tauschii Hardness Genes
             Wada, Kajiyama, Cartagena, Akiyama, Lin, Aoki, Uchiyama, Otani, Shimada, Suzuki, Mukai, and Fukui

P703  Dosage Dependent Gene Expression From Multi-Copy Locus In Transgenic Rice
             AKBUDAK, More, Nandy, and Srivastava

P704  The rhg1/Rfs2 Locus Isolated In Transgenic Plants.
             Ali, Daina, and Lightfoot

P705  Expression Of A Hybrid Wheat High-Molecular-Weight Glutenin Subunit Gene In Sorghum
             mall, Dweikat, elthon, sato, and clemente

P706  Establishing Efficient in vitro Protocols For Foxtail Millet (Setaria italica L. cv. Yugi 1)
             Baxter, Equi, Chen, Berk, and Zale

P707  The Development Of A High Throughput Transient Gene Expression System For Switchgrass (Panicum virgatum L.) Seedlings
             Chen, Equi, Baxter, Berk, and Zale

P708  Functional Analysis Of An Arabidopsis Transcription Factor AtGRFs In Growth And Developmental Alternations Of Transgenic Rapeseed (Brassica napus L. cv. WH10)
             Vanjildorj

P709  Cloning And Characterization Of The Brassica napus Leafy Cotyledon1 Gene
             Prystenski, Stasolla, and Tahir

P710  Transformation Of US-802 Citrus Rootstock With D4E1 Antimicrobial Peptide Gene For Resistance To Huanglongbing Disease
             Bowman, Albrecht, Hall, and McCollum

P712  Seed Specific Expression Of Reporter Genes Controlled By The Promoter From A Peanut Seed Protein Gene (Ara h 2.02)
             Bhattacharya, Faustinelli, Ramos , and Ozias-Akins

P713  Adventitious Shoot Regeneration From Juvenile Cotyledons And A Transformation System For The Oil-Producing Plant “Jatropha curcas L.”
             Khemkladngoen, Cartagena, Shibagaki, and Fukui

Poster: Microarrays

P716  Transcriptomes Of Near-Isogenic Lines In Rice With Contrasting Responses To Drought Stress Revealed Development-Dependent, Drought-Tolerant Candidate Genes.
             Satoh, Ramaiah, Kumar, Mauleon, Bartolome, Serraj, Leung, and Kikuchi

P717  Elucidating Submergence Tolerance Response In Rice Using Transcriptome Analyses
             Walia, Jung, Fukao, Bailey-Serres, and Ronald

P718  Study On Homeobox Transcription Factors During Drought Response In Rice (Oryza sativa ssp. japonica)
             Thu, Chae, Kim, Kim, Jun, Kim, and Nahm

P719  Transcriptomic Analysis Of Starch Biosynthesis In The Developing Grain Of Hexaploid Wheat
             Stamova, Laudencia-Chingcuanco, and Beckles

P720  A Parallel Transcriptomics And Metabolomics Analysis Of Wheat Alloplasmic Lines Reveals Clues On The Regulation Of Central Metabolism In Wheat
             Crosatti, Quansah, Atienza, Marè, Cattivelli, and Fait

P721  Drought Associated Phosphoproteome And Trancriptome Analysis Of Maize
             Ambavaram, Krishnan, Batlang, Settlage, Lee, and Pereira

P723  Transcriptomics Of Axillary Bud Outgrowth Regulation By Shade Signals In Arabidopsis
             Krishnareddy, Casal, and Finlayson

P724  Transcript Profiling Of Common Bean (Phaseolus vulgaris) Using GeneChipreg Soybean Genome Array: Optimizing Analysis By Masking Biased Probes
             Yang, Valdés-López, Xu, Bucciarelli, Gronwald, Hernández, and Vance

P725  Transcript Profiling Of Soybean Seed Development From Fertilization To Maturity
             Jones, Gonzalez, and Vodkin

P726  Localized Resistance Response Of Soybean cv. Peking (PI548402) And PI88788 To Soybean Cyst Nematode Feeding
             Matthews, Hosseini, Matsye, Alkharouf, and Klink

P727  MicroRNAs And MicroRNA Targets Involved In Alfalfa Stem Development
             Valdés-López, Yang, Foo, Gronwald, Samac, Hernández, and Vance

P729  Transcriptome Analysis Of Early Fruit Development In Three Seedy Citrus Genotypes And Their Seedless Mutants
             Stover, Albrecht, and McCollum

P730  Differential Gene Expression Of Ewes Highly Tolerant And Lowly Tolerant To Elevated Dietary Nitrate
             Cockrum, Austin, Kim, Garbe, Fahrenkrug, Taylor, and Cammack

P731  Determination Of cis-Acting Element With Protein Binding DNA Microarray
             Nahm

P732  Transcriptomics Of Plant Defense Priming By Wound-Induced Volatiles
             Frost

P733  Affects Of Cold Temperature On Endodormancy, Flowering, And Transcriptome Profiles In Leafy Spurge
             Dogramaci, Horvath, Chao, Foley, Christoffers, and Anderson

P735  Searching For Candidate Genes Responsible For Skin Colouration In Salmo sp. Using Microarrays
             Sivka, Palandacic, Snoj, and Susnik

P736  Sheep Mammary Transcriptome Analysis By Custom Microarrays
             Bongiorni, Chillemi, Prosperini, Bueno, Valentini, Moioli, and Pariset

P737  Microarray Analysis Of Strenuous Exercise In Endurance Horse PBMCs
             Cappelli, Capomaccio , Barrey, Felicetti, Silvestrelli, and Verini-Supplizi

P738  Unique Genome-Wide Transcriptome Profiles Of Chicken Macrophages Upon Exposure To Salmonella-Derived Endotoxin
             Ciraci, Tuggle, Wannemuehler, Nettleton, and Lamont

P739  Porcine Skin Derived Progenitor (SKP) Spheres And Neurospheres: Distinct “Stemness” Identified By Microarray Analysis
             Zhao, Whitworth, and Prather

P740  Transcriptional Profiling Of Porcine in vivo And Nuclear Transfer Derived Placentas At Day 30 Of Gestation
             Whitworth, Spate, Li, Rieke, Sutovsky, Green, and Prather

Poster: Functional Analysis

P742  A Pair Of Rice Gene Co-Expression Networks For Polygenic Function Discovery
             Ficklin, Luo, and Feltus

P744  Cloning And Functional Analysis Of Autophagy Related Gene, ATG8, From Brachypodium And Wild Emmer Wheat Under Abiotic Stress
             Kuzuoglu, Cebeci Yalcinkaya, Gozuacik, and Budak

P745  Illumina Based Expression Analysis Of Two Puccinia triticina Races During Infection Of Wheat.
             Fellers, and Glasscock

P746  Identification Of Genes Required For Lr21-Mediated Leaf Rust Resistance
             Campbell, Talbert, Scofield, Lagudah, and Huang

P747  Linkage Disequilibrium Among Two Lolium perenne CBF Genes And Association With Freezing Susceptibility
             Bushman, Hulke, and Ehlke

P748  Virus-Induced Gene Silencing For Durable Russian Wheat Aphid Resistance In Wheat
             Valdez, Haley, Peairs, van Eck, and Lapitan

P749  A Short-Chain Dehydrogenase/Reductase Gene Is Required By Magnaporthe oryzae For Infection-Related Development And Pathogenicity
             Kwon, Kim, and Lee

P750  Candidate Genes For Drought-Adaptive Traits In Wheat: Gene Expression Differences In Wheat Differing In Levels Of Stem Carbohydrates
             McIntyre, Casu, and Xue

P751  Development Of Over-Expression Transgenic Rice Using Valuable Genes With Rice Specific Promoters
             Yeon-Ki

P753  Expression And Functional Analysis Of A CBF Gene Family In Brachypodium distachyon
             Dong, Zhang, Feng, Hao, and Fei

P754  A Rice Histone Deacetylase Oshd2 Is Involved In Pathogen Response
             Ding, and Wang

P756  The Role Of RRM Motif Of Rice Nucleolin In Salt Tolerance via Up-Regulation Of Na+/H+ Antiporter, SOS1 Gene Expression And H+-ATPase Activity
             Chamnanmanoontham, Sripinyowanich, Qu, Gu, Roytrakul, and Chadchawan

P757  Isolation And Analysis Of cDNAs Sequences Related To Softening Of Fragaria chiloensis Fruit
             Figueroa, Pimentel, Opazo, Salvatierra, Moya-León, Bruno, Valenzuela, Dotto, Civello, Martínez, and Herrera

P758  Analysis Of Soybean Flowering-Time Genes
             Thakare, Kumudini, and Dinkins

P759  Putative Role Of N-Alkane From Sweet Cherries Epicuticular Waxes In Susceptibility To Cracking
             Rios, Lang, Maldonado, and Silva

P760  Molecular Genetic Basis For Variation In Lignocellulosic Biomass Composition In Shrub Willow (Salix spp.) Bioenergy Crops
             Serapiglia, Stipanovic, Cameron, and Smart

P766  Using Genome Information To Identify The Regulation Of Fruit Texture In Apple
             Schaffer, Johnston, Chagné, Gardiner, Crowhurst, Atkinson, Sutherland, Tacken, Bowen, Gunaseelan, Maddumage, Pindo, Troggio, Costa, Guillen, Guitton, Watson, Velasco, and Tustin

P767  Preliminary Analysis Of Small RNA Data In Soybean Infected By Fusarium virguliforme And Phakopsora pachyrhizi
             Radwan, Calla, Vodkin, Hudson, and Clough

P768  Identification Of Malus ERF Genes Responsive To Waterlogged Conditions In Apple Rootstocks
             Yang, Fazio, Aldwinckle, and Xu

P769  Expression Pattern Of Some Terpene Synthase Encoding Genes In Sweet Orange Fruit Development
             Takita, Souza, Machado, and Virgilio

P770  SRD1 Is Involved In The Aauxin-Mediated Initial Thickening Growth Of Storage Root In Sweetpotato
             Noh, Lee, Huh, and Bae

P771  Organ-Specific Disease Resistance Phenotypes In Transgenic Potato Correlate With R Gene Dosage And Transcription And Defense Response Gene Expression Dynamics
             Gao, and Bradeen

P772  Phenotypic And Molecular Plasticity Of Two Eucalypts Clones In Response To Water Deficit: An Integrated Approach
             VILLAR, COAT, BEDON, NDEKO, MABIALA, NOVAES, KIRST, PLOMION, and GION

P773  Prunus persica Gene Expression And Regulation In Response To Low Temperature
             Cifuentes, and Silva

P774  Study Of Specific Genes Of Infection By Bursaphelenchus xylophilus In Portuguese Pine Trees
             Santos, Roriz, Lima, Franco, and Vasconcelos

P776  The Role Of Cultivar-Specific Expression Patterns Of MdACS3 Gene On Apple Fruit Ripening And Quality
             Varanasi, Mattheis, Rudell, and Zhu

P777  Identification Of Genes Differentially Expressed In Response To Inclination In Pinus radiata D. Don.
             Ramos, Moya-León, Ibáñez, and Herrera

P778  The Development Of Prickles: A Model System To Build Genomic Resources For Rubus
             Swanson

P779  Activation Of A Cyclin D1 Modifies Leaf And Stem Morphology In Poplar.
             Williams, Lowndes, Regan, and Beardmore

P780  LFY Promoter Analysis And Reducing Flowering Time In Crops Of Interest
             Branaman, and Swanson

P782  GO Modeling Of A Summer Pasture Associated Recurrent Airway Obstruction BAL Proteome
             Bright, McCarthy, Nanduri, Shack, Bardzinski, Costa, Burgess, and Swiderski

P783  Evolution Of The AIG1 Domain-Containing Proteins In Plants: Different Modes Of Sequence Divergence Dnd Their Relationships To Functional Diversification
             Guo, Bian, Ma, and Kong

P784  Influence Of Bacteria In Bursaphelechus xylophilus Infection Mechanisms
             Roriz, Santos, Lima, and Vasconcelos

P785  Atlantic Cod (Gadus morhua) Hemoglobin Genes: Diverse Expression Patterns In Development
             Stone, Hori, Gamperl, Bowman, and Borza

P787  Transcriptome Modification Of Peripheral White Blood Cells After Dietary Administration Of Curcumin In Osteoarthritic Affected Dogs.
             Gaspardo, Colitti, Scaini, Bevilacqua, Dalla Pria, Morgante, and Stefanon

P788  Genome-Wide Expression QTL (eQTL) Analysis Of Loin Muscle Tissue Identifies Candidate Genes In Pigs
             Ernst, Steibel, Rosa, Tempelman, Bates, Rilington, Ragavendran, Raney, Ramos, Cardoso, and Edwards

P790  Whole Genome Expression Profiling During Early Bovine Embryo Development Using A Combimatrix Customarrayreg 90K.
             Iamartino, Strozzi, Capoferri, Lazzari, Galli, and Williams

P791  Functional Genomics Approach To Interpreting A Bronchoalveolar Lavage (BAL) Proteome From Horses With Summer Pasture Recurrent Airway Obstruction.
             Swiderski, Bright , McCarthy, Nanduri, Costa, and Burgess

P792  Deep Sequencing Profiling Of Hypoxia-Induced MicroRNAs In The Hypoxia-Tolerant Subterranean Mammal, Spalax ehrenbergi
             Devor, Hernandez, Thimmapuram, Band, and Avivi

P793  Evolution Of The p53 Pathway In The Hypoxia Tolerant Mole-Rat Mimics A Cancer Survival Mechanism
             Band, Ashur-Fabian, and Avivi

Poster: Cellular Processes and Regulatory Networks

P795  Regulation Of The Starch Biosynthesis Pathway In Wheat
             Wanous, Storlie, Senst, and Reynolds

P796  Gene Expression Polymorphisms In Lateral And Upward Growing Subterranean Shoot Meristems Of Elymus Wheatgrasses
             Mott, Wyler, Bushman, and Larson

P797  Hessian Fly Larval Feeding Triggers Enhanced Polyamine Levels In Susceptible Wheat
             Williams, Subramanyam, Sardesai, Zheng, and Minocha

P799  Understanding The Regulation Of Cell Wall Composition In Alfalfa
             ORourke, Tesfaye, Yang, Lamb, Jung, Vance, and Samac

P800  Transcript, Protein, And Metabolite Changes In Response To Water-Deficit And Thermal Stress In A Tolerant Peanut Mini-Core Accession
             Payton, Kottapalli, Burow, Rakwal, Jones, and Mahan

P801  Towards A Poplar Biomass Protein-Protein Interaction Map
             Zhao, Zhao, Sheng, Meade, Jia, Beers, Dickerman, and Brunner

P802  Isolation Of The Genes Underlying A Seed Protein And Oil Composition Locus
             Yesudas, Saini, and Lightfoot

P803  Characterization Of Small RNA Species In Magnaporthe oryzae During Stress Conditions
             Raman, Simon, Romag, Meyers, and Donofrio

P804  Transcript Profiling Provides Evidence Of Functional Divergence And Expression Networks Among Ribosomal Protein Gene Paralogs In Brassica napus
             Whittle, and Krochko

P805  Role Of Alpha Deoxygenase 1 (DOX1) In Plant-Aphid Interactions
             Arevalo-Soliz, Jia, and Goggin

P806  Effects Of Chromosome Number Variations On Global Gene Expression
             Harris, and Makarevitch

P807  Thuricin 17 And Lipo-Chitooligosaccharide Act As Plant Growth And Plant Defence Response Promoters In Solanum lycopersicum (L.)
             Subramanian, Souleimanov, and Smith

P808  Systems Biology Of Mammalian Embryo Implantation And Early Placental Development
             Oliveira, Andropolis, Taghouti, Heyman, Hue, Sandra, Renard, Guillomot, and Lewin

P809  Localization Of Leishmania Parasite Proteins During Infection Within Mouse Macrophages
             Moore, Ndjamen, and Kima

P810  A Protein-DNA Interaction Network For Cell Wall Biosynthesis
             Young, Lin, Peng, Handakumbura, Breton, Mockler, Kay, and Hazen

P811  Solexa Sequencing Analysis Of Chicken Preadipocyte miRNAs
             Yao, Wang, Wang, Wang, and Li

P812  Epithelial Cell Signaling In Innate Immune Responses To Bacterial Infection
             Potter, Arsenault, Napper, Babiuk, Potter, and Griebel

P813  Identification Of Members Of The Wnt Family And Gene Expression In Genomic DNA From Caprine And Porcine Blood
             Worku, Mukhtar, Mikiashvili, and Oh

Poster: Databases

P815  An Improved Version Of "BioResource World"
             Kimura, Watanabe, Sakaniwa, Saito, Yamakawa, and Yamazaki

P816  The Legume Information System Ii: New Tools To Address Tomorrow’S Legume Genomics Needs
             Cannon, Crow, Farmer, Virk, Bharti, Weeks, Nelson, Grant, Shoemaker, and May

P817  Gramene’s Genetic Diversity Module: A Case Study In Flowering Time Variation Across Three Plant Species
             Chen, DeClark, Casstevens, Bradbury, Youens-Clark, Yap, Tung, Ware, McCouch, and Buckler

P818  UniProtKB/Swiss-Prot And Its Relations With The Model Organism Databases
             Schneider, team, and consortuim

P819  Oryzabase Ver. 4: Data-Rich Rice Database With Rich User Interface
             Sakaniwa, Takahashi, Tsuchiya, Saitou, Yamakawa, and Yamazaki

P820  The Universal Protein Resource (UniProt)
             Pruess, and UniProt Consortium

P821  The Medicago truncatula Gene Expression Atlas: A Web Platform For Integrative Mining Of M. truncatula Gene Expression Data
             He, Benedito, Wang, Murray, Zhao, Tang, and Udvardi

P822  Metabolic Pathway Networks For Cereal Plants In The Gramene Database
             Dharmawardhana, Ren, Thomason, Ware, and Jaiswal

P823  BRISKA: Brassica Seed Knowledge Base
             Berube, Tchagang, Wang, Liu, Phan, Famili, and Pan

P824  The EBI Sequence Read Archive: The European Node Of A Global Next Generation Sequence Data Infrastructure
             Overduin, Cheng, Hunter, Gibson, Leinonen, Leonard, Radhakrishnan , and Cochrane

P825  Pathway Databases: The Reactome Model
             DEustachio

P826  TriFLDB: A Database Of Clustered Full-Length Coding Sequences From Triticeae With Applications To Comparative Grass Genomics
             Mochida, Yoshida, Sakurai, Ogihara, and Shinozaki

P829  Germinate 2 – Storage, Visualization And Analysis Of High Volume Genotypic, Phenotypic And Pedigree Data
             Shaw, Cardle, Milne, Waugh, Flavell, Stephen, Bayer, Graham, Kennedy, and Marshall

P830  The Hymenoptera Genome Database
             Munoz-Torres, Reese, Childers, Bennet, Sundaram, Vile, and Elsik

P831  Soybean Proteome Database And Its Application To Omics Analysis Of Early-Stage Soybean Seedlings Under Flooding Stress
             Sakata, Ohyanagi, and Komatsu

P832  Design And Implementation Of The Cacao Genome Database
             Zheng, Jung, Staton, Svancera, Lee, Ficklin, Kuhn, Schnell, Montamayor, and Main

P833  QTL Analysis, Visualization And The Link To Genomes At SGN Database
             Tecle, Menda, Buels, and Mueller

P834  SEDM, A Expression Data Module For The SOL Genomic Network Database
             Bombarely, Edwards, Menda, Tecle, Pujar, York, Mills, Gosselin, Buels, Coates, and Mueller

P835  The Gramene Genetic Diversity Module: A Resource For Genotype-Phenotype Association Analysis In Grass Species
             DeClerck, Casstevens, Chen, Youens-Clark, Yap, Tung, Derwent, Spooner, Zhao, Bradbury, Ware, Buckler, and McCouch

P836  Ensembl Metazoa And Ensembl Plants: New Platforms For Genome Scale Data
             Kersey

P837  The Bovine Genomics Database Application
             Arantes, Grant, Moore, and Stothard

P838  Bovine Genome Database Systems Infrastructure
             Sundaram, Childers, Reese, Vile, and Elsik

P839  How To Use The New Functionalities At MaizeGDB: Now Sequence-Centric!
             Harper, Schaeffer, Sen, Andorf, Cannon, Campbell, and Carolyn J.

P840  POPcorn: A Project Portal For Corn
             Cannon, Sen, and Lawrence

P841  Integration Of Existing Marker And Mapping Data Into Phaseolusgenes, A Genome Database For Phaseolus vulgaris
             Gepts, Lin, dos Santos, Kami, Schaal , Fass, Joshi, Britton , and Lu

P842  The Bovine Genome Database
             Childers, Reese, Sundaram, Vile, Hagen, Bennett, and Elsik

P843  Gramene: A Resource For Comparative Grass Genomics
             Yap, Avraham, Buckler, Casstevens, Chen, DeClerck, Dharmawardhana, Jaiswal, McCouch, Ren, Spooner, Thomason, Tung, Ware, Wei, and Youens-Clark

P844  Development Of Cassava Database: cassava.psc.riken.jp
             Sakurai, Yoshida, Akiyama, Shinozaki, and Ishitani

P845  Gene Expression Network Construction In Rice
             Hamada, Yamamoto, Mochizuki, Suwabe, Kurata, and Yano

P846  Design & Development Of The Rare & Endangered Equines Database System
             Carroll, Fortriede, Soeurt, Grybas, Mahl, Brentin, Lucas, Tollman, Cothran, Lüer, and Blakey

P847  GrainGenes : The Triticeae Genome Database
             Blake, Matthews, Lazo, Hane, You, Lee, and Anderson

Poster: Software

P849  Transcriptome Assembly Of Next Generation Sequencing Data Using Nextgene Software And The Condensation Tool™
             Manion, LeVan, Ren, Wu, and Liu

P850  SeqToPathwayMapper: A RNA-Seq Based Gene Expression And Pathway Analysis Server
             Li, and Zhao

P851  SNPlotz: A Genome Plot Tool For SNP Association Studies
             Hu, Fernando, Garrick , and Reecy

P852  A Web-Based Platform For The Storage And Analysis Of Embryogene Microarray Data
             Grant, Arantes, Robert, Sirard, Dixon, Dyck, Foxcroft, and Stothard

P853  REPET: Pipelines For The Identification And Annotation Of Transposable Elements In Genomic Sequences
             Flutre, Inizan, Hoede, and Quesneville

P854  Human Genome Assembly And Analysis On A Desktop Computer Using Dnastar’S Prototype Pipeline
             Keyser, Baldwin, Nelson, Durfee, Stieren, Schwei, and Blattner

P855  Development Of Resources To Facilitate Cross-Species Comparisions
             Kwitek, Davis, Shimoyama, Hu, Park, Munzenmaier, Dwinell, and Reecy

P856  Identification Of Pathogenic Bacteria Associated With Plants And Animals Using Nextgene Software
             McGuigan, Manion, LeVan, Bouton, Shouyong, and Liu

P858  GBrowse And Next Generation Sequencing Data
             Cain, Clements, Stein, and Consortium

P860  Development Of Software To Improve The Design Efficiency Of The Intron-Spanning PCR Primer From EST Utilizing Genomic Information Of Arabidopsis thaliana
             Fujii, Ogata, Sugiyama, Shimada, Endo, Shimizu, and Omura

P861  Comparative Genomics Tools In GMOD
             Clements, McKay, Youens-Clark, Faga, and Cain

P863  A Short-Read Analysis Pipeline For Rice mRNA-Seq Data Under Abiotic Stress
             Kawahara, Sakai, Wakimoto, Mizuno, Matsumoto, and Itoh

P864  IMP: An Automated Pipeline For Intron Prediction From Non-Cognate ESTs And Flanking Primer Design To Aid In Marker Development
             Sanderson, Vijayan, Alahakoon, and Bett

P865  The Concept Of Client-Side Programming As The Driving Force Of Complex Computation In Web Based Applications
             Hild, and Prince

P866  Evolutionary Analysis As The Basis For Interpreting, Comparing, And Presenting Genomes: The GATOR And PHRINGE System
             Boore, and Fuerstenberg

P867  DNASTARreg – Software Solutions For Today’s Next Generation Sequencing Technologies And Applications
             Steinhauser, Keyser, Stieren, Durfee, McCormick, Nelson, Baldwin, Li, Solberg, Dullea, Nash, Plunkett, Wong, Schwei, and Blattner

Poster: Algorithms

P869  A Bioinformatics Approach To Detect Interchromosomal Trans-Splicing In Bovine Full Length cDNA Databanks
             Herai, and Yamagishi

P870  CONSORT: A Program For Contig Sorting By Means Of Mate Pair Information
             Caniato, Vezzi, Albiero, Campagna, Schiavon, Dangelo, Zamperin, Vitulo, and Valle

P871  Plant Genome Annotation With GeneMark-ES
             Burns, Lomsadze, and Borodovsky

P872  Crop Ontology: A Controlled Vocabulary For Trait Descriptions For Maize, Wheat, Chickpea, Sorghum, Banana And Plantain, Potato And Rice
             Shrestha, Senger, Mauleon, Davenport, and Arnaud

P873  Modeling Linkage Disequilibrium Mapping For Genetic Diseases
             Gomez-Raya

P874  High-Density, Genome-Wide Profiling Of Over 600K Single Nucleotide Polymorphisms (SNPs) And Over 900K Copy Number Variations (CNVs) Using The Affymetrix Mouse Diversity Genotyping Array
             Pirani, Yang, Pardo-Manuel de Villena, Churchill, Hubbell, and Webster

P875  Multi-Site Maize Les Mutant Comparison By Applying Computational Methods To Phenotype Imagery
             Green, Chintamanani, Cliff, Gurmukh, Rahul, Peter, and Shyu

P876  A New Approach For Haplotype Inference In Large And Complex Cattle Pedigrees
             Villa-Angulo, Matukumalli, Van Tassell, and Grefenstette

P877  Kinannote: A Method For Genome-Wide Identification And Classification Of Protein Kinases
             Goldberg, Griggs, Manning, Qiandong, Birren, and Haas

Poster: Proteomics

P879  A Staged Search Strategy For Proteomics Based Structural Genome Annotation In Chicken
             Sanders, Wang, Bridges, McCarthy, and Burgess

P880  Protein-Protein Interaction Studies To Detect Essential Functional Orthologues In Peanut
             Katam, Suravajhala, Kambiranda, and Basha

P883  Removal Of Cell Wall Results In Chromatin Reorganization And Differential H3K18 And H3K23 Acetylation In Rice (Oryza sativa)
             Tan, Zhang, Ronald, Wang, and Peng

P884  Additional Alien Chromosomes In Common Wheat Affect On The Profile Of Glutenin In The Endosperm
             Tanaka, Arakawa, and Tsujimoto

Poster: Metabolomics

P886  Detecting The Unknown: Mining Non-Targeted Metabolic Fingerprints For Novel Gene X Genotype Interactions
             DiLeo, Strahan, Krasnoff, Zhang, and Hoekenga

Poster: Other Genome Topics

P888  Post Transcriptional Gene Silencing Of Root-Knot Nematode In Soybean
             Ibrahim, Alkharouf, Meyer, Aly, Gamal El-Din, Hussein, and Matthews

P890  Demonstrating Effective RNAi Product Line To Control Honeybee Colony Collapse Factors
             Ben-Chanoch, Ellis, Glick, Hunter, Maori, Paldi, Sela, and Yarden

P891  Sensitivity Of Bipolaris Species To The Fungicides Tilt And Quadris
             Little, Samac, and Dhir

P892  A Long Forgotten Phosphatase Produced By A Nasty Bug
             Ponder, III, and Gonzalez

P893  DNA Is Structured As “Jigsaw Puzzle”
             Liu, Zhang, Wu, Huang, and Zhang

P895  Production And Characterization Of Recombinant OsCaM And OsCML Proteins Encoded By A Large Family Of Calcium-Binding Proteins From The Rice Genome
             Buaboocha, Chinpongpanich, Phean-o-pas, Phithakrotchanakoon, Tanchotesrinon, Chaikiratisak, Linsuwanon, Ratanaprapa, and Pisanupong

P896  Optimising Biomass Yield In Miscanthus
             Farrar, Hawkins, Jensen, Robson, Sanderson, Clifton Brown, and Donnison

P897  A Mutant Deficient In S-Adenosylhomocysteine Hydrolase1 In Arabidopsis Shows Defects In Root Hair Development
             Wu, Li, Kolenovsky, Caplan, Cui, Cutler, and Tsang

P898  Identifying Genes Controlling Feruloylation In Grass Cell Walls.
             Buanafina

P900  Martian Life Detection With Xylose Enantiomers
             White, Zhang, and Sun

P901  Diversification Of Duplicated MADS-Box And F-Box Genes In Coding Regions: Prevalence Of Alterations In Exon-Intron Structure And Reading Frame
             Xu

P902  Breeding For Begomovirus Resistance In Tomato (Solanum lycopersicum L.)
             Sadashiva, Reddy, Ravishankar, Singh, Manjunath, Swarnalatha, Deepa, Sudarshini, and Pushpalatha

P903  Factors Affecting The Absence Of Diarrhetic Shellfish Poisoning (DSP) In Matsushima Bay, Japan
             Okumura, Sakami, Muraoka, Kamiyama, Suzuki, and Sasaki

P904  New Taastrup-Like Virus, Rhabdoviridae, Lethal To Leafhoppers
             Hunter, and Adkins

P905  Variability Of Olea europaea Genotypes Growing Under Aluminum Stress
             Freitas, Ribeiro, Fernandes, Amorim, Neto, Soares, Pasqual, and Cançado

P906  Apple Polygalacturonase Inhibiting Protein1 Expressed In Transgenic Tobacco Inhibits Polygalacturonases From Fungal Pathogens Of Apple And The Anthracnose Pathogen Of Lupins
             Oelofse, Dubery, Meyer, Arendse, Gazendam, and Berger

P907  Analysis Of The Response Of Medicago truncatula Calcium Oxalate Mutants To Abiotic Stress
             Navia-Gine, Rafiei Boroujeni, and Korth

P908  Improved Extraction Of Biomolecules From Plants, Animals, And Fungi With The PCT Shedder
             Lawrence, Smejkal, Connell, Gross, Carlson, Dussault, Ting, Potter, Lazarev, and Schumacher

P909  Phenomic Analysis Of Natural And Induced Variation In Brachypodium distachyon
             Vogel, Tyler, Bragg, Watt, Furbank, Budak, and Tuna

P910  Trypsin-Like Proteins Of The Fungi As Possible Markers Of Phytopathogenicity
             Elpidina, Dunaevsky, Belozersky, Dubovenko, Lord, and Oppert

P911  Ambient Temperature Stabilization Of RNA Derived From Feline And Canine Tumor Cells For Use In Gene Expression Assays
             Scott, Duckett, Martinez, Wong, Iverson, Modiano, and Nunez

Poster and Computer Demonstration

CP913  Animal Genomics With Galaxy: Analyze, Publish, And Visualize | usegalaxy.org
             Anton

CP914  The Rice Annotation Project Database (RAP-DB): IRGSP/RAP Build 5 Annotation
             Itoh, Tanaka, Sakai, Numa, Amano, Ikawa, and Matsumoto

CP915  GDR In Drupal: Facilitating Community Building And Efficient Maintenance
             Facilitating Community Building And Efficient Maintenance

CP916  The Soybean Genome Database (SoyGD) Genomic Interactome Viewer
             Jayaraman , Natarajan, and Lightfoot

CP917  PhaseolusGenes: A Genomics Information Management And Marker Discovery Toolkit For A Non-Model Organism
             Lin, Gepts, Schaal, Boveda, dos Santos, Fass, Kami, Joshi, Britton, and Lu

CP918  Community Curation Software At The SOL Genomics Network (solgenomics.net)
             Mueller , Tecle, Pujar, Bombarely, Buels, and Menda

CP919  Using The JBrowse Genome Browser With Large Amounts Of Data
             Skinner, Uzilov, Stein, Mungall, and Holmes

CP920  Data Mining At PLEXdb: The Plant And Plant Pathogen Expression Database For Functional And Comparative Genomics
             Dash, Lu, Cannon, Lauter, Wise, and Dickerson

CP921  TreeGenes: A Forest Tree Genome Database
             Wegrzyn, Figueroa, Choi, Chen, and Neale

CP922  The GRIN-Global Information Management System – A Preview And Opportunity For Public User Input
             Cyr, Little, Weaver, Millard, Gardner, Emberland, Reisinger, Sinnott, Kinard, and Bretting

CP923  CropStoreDB: A Practical Approach To Managing Crop Data; From Traits To Sequences.
             Carion, Teakle, Andongabo, Verrier, and King

CP924  Plant Ontology: Databases And Applications
             Elser, Cooperl, and Jaiswal

CP925  Introducing The Use Of The Linkage Desiquilibrium For QTL Mapping By MCQTL
             RAHMANI, JASSON, LOUIS, VENTELON-DEBOUT, MOREAU, and MANGIN

CP926  TEPrimers: Unique Transposable Element Insertion Junction Identification And PCR Primer Design For Marker Development
             You, Wanjugi, Huo, Lazo, Luo, Anderson, Dvorak, and Gu

CP927  psRNATarget: A Plant Small RNA Regulator/Target Analysis Server
             Dai, and Zhao

CP928  PlantGDB: A Web-Based Platform For (Comparative) Plant Genome Research
             Duvick, Lushbough, Lawrence, and Brendel

CP929  MaizeGDB: Tools And Resources
             Andorf, Sen, Cannon, Campbell, Schaeffer, Harper, and Lawrence

CP930  MaizeSequence.org Release 4a.53
             Pasternak, Olson, Chuah, Chia, Stein, and Ware

CP931  Tripal: A Construction Toolkit For Online Genomic Databases
             A Construction Toolkit For Online Genomic Databases

CP932  Trichome: A Comparative Omics Database For Plant Trichomes
             Dai, Wang, Yang, Tang, Broun, Marks, Sumner, Dixon, and Zhao

CP933  Tablet, Flapjack And Strudel : SCRI Visualization Tools To Support SNP Discovery, Genotype Analysis And Comparative Mapping
             Marshall, Milne, Bayer, Shaw, Cardle, Stephen, Ramsay, Comadran, Thomas, Russell, Flavell, and Waugh

CP934  Visualization Software And Data Server For Next-Generation Genomics
             Loraine, Patel, Nicol, DiSera, Blanchard, and Nix

CP935  Plant Genomic Resources At National Center For Biotechnology Information
             Smith-White, Chetvernin, Jang, Klimke, Raina, Resenchuk, Rotmistrovsky, Tolstoy, Church, Maglott, Mizrachi, and Tatusov

Computer Demonstration Only

C936  Manual Genome Annotation With Otterlace
             Loveland

C937  How To Use MetaCyc, A Reference Database For Metabolism, And SolCyc, A Collection Of Pathway Databases For The Solanaceae, On The Web And Using Pathway Tools
             Mueller, Pujar, Caspi, and Karp

C938  GMOD Project Update
             Clements, and Cain

C940  TAGdb: A Tool For Gene And Promoter Discovery In Complex Plant Genomes
             Duran, Marshall, Eales, Imelfort, Berkman, McKenzie, Hayward, Batley, and Edwards

Additional Abstracts NOT in Program

P941  Development Of Over-Expression Transgenic Rice Using Valuable Genes With Rice Specific Promoters
             Lee