Computer Demonstrations

Computer database and software demonstrations will be conducted all week in the "computer room", located in the California Room.

Saturday - Early Afternoon, January 9, 2010 -- 1:30 pm - 3:00 pm

1:30 pm
Animal Genomics with Galaxy: Analyze, Publish, and Visualize | usegalaxy.org
Daniel Blankenberg
(daniel@galaxyproject.org)
galaxyproject.org

2:30 pm
BeeSpace Interactive System for Functional Analysis
Chris Fields et al.
(cjfields@illinois.edu)
University of Illinois Urbana-Champaign

Sunday - Late Afternoon, January 10, 2010 -- 3:50 pm - 6:00 pm

3:50 pm
Community Curation Software at the Sol Genomics Network (solgenomics.net)
Lukas Mueller et al.
(lam87@cornell.edu)
Boyce Thompson Institute, Ithaca NY

4:10 pm
The Rice Annotation Project Database (RAP-DB): IRGSP/RAP Build 5 Annotation
Takeshi Itoh et al.
(taitoh@affrc.go.jp)
NIAS, Tsukuba, Japan

4:30 pm
How to Use MetaCyc, a Reference Database for Metabolism, and SolCyc, a Collection of Pathway Databases for the Solanaceae, on the Web and Using Pathway Tools Lukas Mueller et al.
(lam87@cornell.edu)
Boyce Thompson Institute, Ithaca NY

4:50 pm
GDR in Drupal: Facilitating Community Building and Efficient Maintenance
Sook Jung et al.
(sook@bioinfo.wsu.edu)
Washington State University, Pullman WA

5:10 pm
The Soybean Genome Database (SoyGD) Genomic Interactome Viewer
David Lightfoot et al.
(ga4082@siu.edu)
Southern Illinois University, Carbondale IL

5:30 pm
PhaseolusGenes: a Genomics Information Management and Marker Discovery Toolkit for a Non-Model Organism
Dawei Lin et al.
(lhslin@ucdavis.edu)
University of California, Davis CA

5:50 pm
Manual Genome Annotation with Otterlace
Jane Loveland
(jel@sanger.ac.uk)
Sanger Institute, Cambridge, UK

Monday - Early Afternoon, January 11, 2010 -- 12:50 pm - 3:00 pm

12:50 pm
GMOD Project Update
Dave Clements and Scott Cain
(clements@nescent.org)
NESCent, Durham NC

1:30 pm
Data Mining at PLEXdb: the Plant and Plant Pathogen Expression Database for Functional and Comparative Genomics
Sudhansu Dash et al.
(sdash@iastate.edu)
Iowa State University, Ame IA

1:50 pm
TreeGenes: a Forest Tree Genome Database
Jill Wegrzyn et al.
(jlwegrzyn@ucdavis.edu)
University of California, Davis CA

2:10 pm
The GRIN-Global Information Management System: a Preview and Opportunity for Public User Input
Pete Cyr et al.
(pete.cyr@ars.usda.gov>
USDA-ARS, Ames IA

2:30 pm
CropStoreDB: a Practical Approach to Managing Crop Data; from Traits to Sequences
Pierre Carion et al.
(pierre.carion@bbsrc.ac.uk)
Rothamsted Research, UK

Wednesday - Morning, January 13, 2010 -- 10:20 am - 12:30 pm

10:20 am
Plant Ontology: Databases And Applications
Justin Elser
(elserj@science.oregonstate.edu)
Oregon State University, Corvallis OR

10:40 am
The LAILAPS Search Engine: a User Specific Relevance Ranking over Life Science Database Entries
Mandy Weißbach et al.
(weissbach@ipk-gatersleben.de)
IPK, Gatersleben, Germany

11:00 am
The Accuracy of Genomic Selection due to Linkage Analysis Information and due to Linkage Disequilibrium
Tu Luan et al.
(tu.luan@umb.no)
Norwegian University of Life Sciences, Aas, Norway

11:20 am
Introducing the Use of the Linkage Disequilibrium for QTL mapping by MCQTL
Abdelaziz Rahmani et al.
(Abdelaziz.Rahmani@toulouse.inra.fr)
INRA, Toulouse, France

11:40 am
TEPrimers: Unique Transposable Element Insertion Junction Identification and PCR Primer Design for Marker Development
Frank You et al.
(frank.you@ars.usda.gov)
University of California, Davis CA

12:00 noon
TAGdb: a Tool for Gene and Promoter Discovery in Complex Plant Genomes
Chris Duran et al.
(c.duran@uq.edu.au)
University of Queensland, Brisbane, Australia

12:20 pm
psRNATarget: a Plant Small RNA Regulator/Target Analysis Server
Xinbin Dai and Patrick Zhao
(xdai@noble.org)
Noble Foundation, Ardmore OK

Wednesday - Early Afternoon, January 13, 2010 -- 1:30 pm - 3:40 pm

1:30 pm
PlantGDB: a Web-based Platform for (Comparative) Plant Genome Research
Jon Duvick et al.
(jduvick@iastate.edu)
Iowa State University, Ames IA

1:50 pm
MaizeGDB: Tools and Resources
Carson Andorf et al.
(carson.andorf@ars.usda.gov)
USDA-ARS, Ames IA

2:10 pm
MaizeSequence.org Release 4a.53
Shiran Pasternak et al.
(shiran@cshl.edu)
Cold Spring Harbor Laboratory, NY

2:30 pm
Tripal: a Construction Toolkit for Online Genomic Databases
Stephen Ficklin et al.
(ficklin@clemson.edu)
Clemson University Genomics Institute, SC

2:50 pm
TrichOME: a Comparative Omics Database for Plant Trichomes
Patrick X. Zhao et al.
(pzhao@noble.org)
Noble Foundation, Ardmore OK

3:10 pm
Tablet, Flapjack and Strudel : SCRI Visualization Tools to Support SNP Discovery, Genotype Analysis and Comparative Mapping
David Marshall et al.
(David.Marshall@scri.ac.uk)
Scottish Crop Research Institute, Dundee, UK

3:30 pm
Integrated Genome Browser: Visualization Software and Data Server for Next-Generation Genomics
Ann Loraine et al.
(aloraine@uncc.edu)
University of North Carolina, Charlotte NC

Should you wish to demo any computer system and/or present an "electronic poster" during the meeting, please submit an abstract for "Computer Demonstration" on the Abstract submissions form. Selecting this option will provide you with the option of solely presenting the "Demonstration Only" or to present a "Demonstration and Poster".

Please note that any software which is demonstrated at PAG must be available to the scientific community (either as freeware or shareware).

It is expected that at least 20 computers will be available in the California Room for e-mail, telnet, and web access.

Click here to go back to the PAG Table of Contents


This page last updated Mon Jan 4 13:28:34 EST 2010