Computer Demonstrations

Computer database and software demonstrations will be conducted all week in the "computer room", located in the California Room.

Sunday - Late Afternoon, January 13, 2008 -- 3:35 pm - 5:45 pm

3:35 pm
VISTA: Computational Tools for Comparative Analysis of DNA Sequences and Whole Genomes
Inna Dubchak
(ildubchak@lbl.gov)
Lawrence Berkeley National Laboratory, Berkeley CA

3:55 pm
Plant Genomic Resources at National Center for Biotechnology Information
Brian Smith-White et al.
(smtwhite@ncbi.nlm.nih.gov)
National Center for Biotechnology Information, Bethesda MD

4:15 pm
GDR (Genome Database for Rosaceae): Integrated Web-Database for Rosaceae Genomics and Genetics Data
Sook Jung et al.
(sookjc@gmail.com)
Clemson Unversity, Clemson SC

4:35 pm
Phytozome: A Comparative Hub for Plant Evolutionary and Functional Genomics
David Goodstein et al.
(dmgoodstein@lbl.gov)
DOE Joint Genome Institute, Walnut Creek CA

4:55 pm
BatchPrimer3: A High Throughput Web Application for PCR and Sequencing Primer Design
Frank You et al.
(frankyou@pw.usda.gov)
University of California at Davis, Davis CA

5:15 pm
The DNAAlignEditor Tool
Hector Sanchez-Villeda et al.
(sanchezvilledah@missouri.edu)
University of Missouri, Columbia MO

5:35 pm
The Plant Ontology Database: A Community Resource for Plant Structure and Developmental Stages Controlled Vocabulary and Annotations
Pankaj Jaiswal et al.
(pj37@cornell.edu)
Cornell University, Ithaca, NY

Monday - Early Afternoon, January 14, 2008 -- 12:50 pm - 3:00 pm

12:50 pm
The Generation Challenge Programme (GCP) Platform for Crop Research
Richard Bruskiewich et al.
(r.bruskiewich@cgiar.org)
International Rice Research Institute, Manila, Philippines

1:10 pm
The Rice Annotation Project Database (RAP-DB): Transcriptome-based Annotation of the Oryza sativa ssp. japonica Genome
Tsuyoshi Tanaka and The Rice Annotation Project.
(tstanaka@affrc.go.jp)
National Institute of Agrobiological Sciences, Tsukuba, Japan

1:30 pm
Sol Genomics Network (SGN): A Community-Based Annotation System
Isaak Tecle et al.
(iyt2@cornell.edu)
Cornell University, Ithaca NY

1:50 pm
The SGN Alignment Analyzer and Tree Browser Tool
Lukas Mueller and Chris Carpita
(lam87@cornell.edu)
Cornell University, Ithaca NY

2:10 pm
PLEXdb: Plant and Pathogen Expression Database and Tools for Comparative and Functional Genomics Analysis
Sudhansu Dash et al.
(sdash@iastate.edu)
Iowa State University, Ames IA

2:30 pm
A Forest Tree Genome Database
Jill Wegrzyn et al.
(jlwegrzyn@ucdavis.edu)
University of California at Davis, Davis CA

2:50 pm
SSWAP (Simple Semantic Web Architecture and Protocol) Drives the VPIN (Virtual Plant Information Network)
Damian Gessler et al.
(ddg@ncgr.org)
National Center for Genome Resources, Santa Fe NM

Wednesday - Mid Afternoon, January 16, 2008 -- 2:20 pm - 4:30 pm

2:20 pm
Gallus GBrowse: A Genomic Database for the Chicken
Carl Schmidt and Lincoln Stein
(schmidtc@udel.edu)
University of Delaware, Newark DE

2:40 pm
The Joined GEPAS, Babelomics and Blast2GO Suites: Statistical and Functional Analysis of Genomics Data on the Web
Ana Conesa et al.
(aconesa@cipf.es)
Centro de Investigación Príncipe Felipe, València, Spain

3:00 pm
The Legume Information System (LIS): An Integrated, Dynamic Comparative Legume Information Resource
Selene Virk et al.
(smv@ncgr.org)
National Center for Genome Resources, Santa Fe NM

3:20 pm
The Soybean Genome Database (SoyGD) Revised Following Genomic Sequence Comparisons
David Lightfoot et al.
(ga4082@siu.edu)
Southern Illinois University, Carbondale IL

3:40 pm
VPhenoDBS-Maize: A Web-Based Search Engine for Maize Phenotypes
Chi-Ren Shyu et al.
(shyuc@missouri.edu)
University of Missouri, Columbia MO

4:00 pm
MaizeGDB Community Curation Tools
Taner Sen et al.
(taner.sen@ars.usda.gov)
USDA-ARS, Ames IA

4:20 pm
The Maize Genome Browser
Shiran Pasternak et al.
(shiran@cshl.edu)
Cold Spring Harbor Laboratory, Cold Spring Harbor NY

4:40 pm
Interpretation of Microarray Gene Expression Data Using Molecular Regulatory Networks
Anton Yuryev
(ayuryev@ariadnegenomics.com)
Ariadne Genomics, Rockville MD

Should you wish to demo any computer system and/or present an "electronic poster" during the meeting, please submit an abstract for "Computer Demonstration" on the Abstract submissions form. Selecting this option will provide you with the option of solely presenting the "Demonstration Only" or to present a "Demonstration and Poster".

Please note that any software which is demonstrated at PAG-XV must be available to the scientific community (either as freeware or shareware).

It is expected that at least 20 computers will be available in the California Room for e-mail, telnet, and web access.

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This page last updated Fri Dec 7 16:39:44 EST 2007