Computer Demonstrations

Computer database and software demonstrations will be conducted all week in the "computer room", located in the California Room.

Sunday - Late Afternoon, January 15, 2005 -- 4:10 pm - 6:20 pm

4:10 PM
MaizeGDB, the Maize Genetics and Genomics Database
Carolyn Lawrence et al.
(triffid@iastate.edu)
Iowa State University, Ames IA

4:30 PM
PLEXdb Plant and Pathogen Expression Database and Tools for Comparative and Functional Genomics Analysis
Julie Dickerson et al.
(julied@iastate.edu)
Iowa State University, Ames IA

4:50 PM
Plant Genomic Resources at NCBI
Brian Smith-White et al.
(smtwhite@ncbi.nlm.nih.gov)
National Center for Biotechnology Information, Bethesda MD

5:10 PM
Recent Additions to the Soybean Genome Database (SoyGD): a Browser for Display of the Integrated Physical, Genetic and Gene Maps of Glycine max
David Lightfoot et al.
(ga4082@siu.edu)
Southern Illinois University, Carbondale IL

5:30 PM
Extension of a Bovine QTL Viewer by Integrating Genome Sequence and SNP Data
Hanni Salih et al.
(h_s1lih@neo.tamu.edu)
Texas A&M University, College Station TX

5:50 PM
Phylogenomic Resource for Protein Function and Structure Prediction
Nandini Krishnamurthy et al.
(nandinik@berkeley.edu)
University of California, Berkeley CA

6:10 PM
Using Graphical Pipelining Software for Analyzing LASS1 (LAG1 Longevity Assurance Homolog 1) Ortholog Proteins
Darryl Leon
(dleon@scitegic.com)
SciTegic, San Diego CA

Monday - Early Afternoon, January 167, 2005 -- 12:50 pm - 3:00 pm

12:50 PM
OligoSpawn: A Software Tool for the Design of Overgo Probes from Large Unigene Datasets
Jie Zheng et al.
(zjie@cs.ucr.edu)
University of California, Riverside CA

1:10 PM
PICKY 2.0: Shared Oligo Design for Large Genomes with Very Similar Gene Families
Hui-Hsien Chou
(hhchou@iastate.edu)
Iowa State University, Ames IA

1:30 PM
ComboScreenJ: Web-Deployed Tool for Scoring BAC Filters
James Kupke et al.
(jkupke@purdue.edu)
Purdue University, West Lafayette IN

1:50 PM
MCQTL: Multi-Allelic QTL Mapping in Multi-Cross Design
David Delannoy et al.
(delannoy@toulouse.inra.fr)
INRA, Castanet-Tolosan, France

2:10 PM
TASSEL 2.0: A Software Package for Association and Diversity Analyses in Plants and Animals
Zhiwu Zhang et al.
(zz19@cornell.edu)
Cornell University, Ithaca NY

2:30 PM
MadMapper and CheckMatrix - Python Scripts to Infer Orders of Genetic Markers and for Visualization and Validation of Genetic Maps and Haplotypes
Alexander Kozik and Richard Michelmore
(akozik@atgc.org)
University of California, Davis CA

2:50 PM
Algorithms and Implementations for Constructing Dense Linkage Maps with Complex Pedigree
Xuelu Liu and Michael Grosz
(xuelu.liu@monsanto.com)
Monsanto Co., St. Louis MO

Wednesday - Mid Afternoon, January 18, 2004 -- 2:20 pm - 4:30 pm

2:20 PM
GGT: A Swiss Army Knife for Molecular Marker Data
Ralph van Berloo and Fred van Eeuwijk
(ralph.vanberloo@wur.nl)
Wageningen University, Wageningen, Netherlands

2:40 PM
The Comparative Map and Trait Viewer (CMTV): Visual Integration of Disparate and Dispersed Genomic Data
Andrew Farmer et al.
(adf@ncgr.org)
National Center for Genome Resources, Santa Fe NM

3:00 PM
Generation Challenge Programme (GCP) Domain Modeling and Crop Information Platform
Richard Bruskiewich et al.
(r.bruskiewich@cgiar.org)
International Rice Research Institute (IRRI), Los Baņos, Philippines

3:20 PM
Integrating DIVA-GIS into the Generation Challenge Program (GCP) Platform
Reinhard Simon et al.
(r.simon@cgiar.org)
International Potato Center (CIP), Lima, Peru

3:40 PM
MetNet: Integrated Software for Visualization and Analysis of Experimental Data and Metabolic Networks
Eve Wurtele et al.
(mash@iastate.edu)
Iowa State University, Ames IA

4:00 PM
How to Build an In-House Bioinformatics System Tailored to Your Local User Community
Brian Fristensky
(frist@cc.umanitoba.ca)
University of Manitoba, Winnipeg, CA

4:20 PM
MapDisto, a Tool for Easy Mapping of Genetic Markers
Mathias Lorieux
(m.lorieux@gmail.com)
CIAT, Cali, Colombia

Should you wish to demo any computer system and/or present an "electronic poster" during the meeting, please submit an abstract for "Computer Demonstration" on the Abstract submissions form. Selecting this option will provide you with the option of solely presenting the "Demonstration Only" or to present a "Demonstration and Poster".

Please note that any software which is demonstrated at PAG-XIV must be available to the scientific community (either as freeware or shareware).

It is expected that at least 20 computers will be available in the California Room for e-mail, telnet, and web access.

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This page last updated Thu Oct 20 15:38:31 EDT 2005