PAG-XIII Abstracts

This page last updated Tuesday, 11-Jan-2005 18:18:26 EST

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Poster: Databases

P807  Animal And Plant Genome Resources At NCBI
            Kim D. Pruitt

P808  The Universal Protein Resource (UniProt)
            Manuela Pruess

P809  Swiss-Prot, The Manually Annotated Section Of The UniProt Knowledgebase
            Michel Schneider

P810  Web Accessible Tropical Crop Databases
            Manuel Ruiz

P811  Integration And Access Of Genetic Map And Plant Genetic Make-Up Data Through A Datawarehouse And Internet Portal
            Raymond van Daelen

P812  Bioresource World (BRW) - Information Archive Of The National Bioresource Project
            Yukiko Yamazaki

P813  The Plant Genomics Database Infrastructure At The Scottish Crop Research Instute
            David F Marshall

P814  PLANET: A Network Of European Plant Databases Connecting Plant Genome Data In An Integrated Knowledge Resource
            Heiko Schoof

P815  Germinate: A Plant Data Management System
            Jennifer M. Lee

P816  Gramene Diversity Module: Sharing The Data Behind Germplasm, QTL, And Breeding Studies
            Edward S. Buckler

P817  Plant Genome Size (DNA C-Values) Database
            Michael D Bennett

P818  The Plant Genomics Network (PGN), A Website For Plant EST Sequencing Projects
            Teri Solow

P819  GDPC: The Genomic Diversity And Phenotype Connection: Open-Source Platform For Accessing Public Data Via XML Web Services
            Terry M Casstevens

P820  Phytome: A Plant Comparative Genomics Resource
            Stefanie Hartmann

P821  Technical Challenges In The Integration Of Microarray Data Into A Biological Information Resource
            Mary Montoya

P822  AGRIS: A Platform To Establish Cis-Regulatory Networks And To Identify Direct Targets For Transcription Factors In Arabidopsis thaliana
            Saranyan K. Palaniswamy1

P823  EST/cDNA Alignments Revealed Distinct Features Of Alternative Splicing In Plants
            Bing-Bing Wang

P824  CitEST: A Portal For The Integration Of Genetic Breeding, Functional And Comparative Genomics Of Citrus
            Gustavo Astua-Monge

P825  in silico Identification And Characterization Of SSRs From Citrus ESTs
            Dario A. Palmieri

P826  New Display And Search Tools At The Cotton Portal
            Hongyu Yang

P827  MaizeGDB In A Nutshell: A Tour Of The Maize Community Database
            Trent E. Seigfried

P828  URMeLDB: A Genome Database For Medicago truncatula
            Manuel Spannagl

P829  Annotation Of The Rice Genome At TIGR
            C. Robin Buell

P830  A Genome Database For Rosaceae (GDR)
            Doreen Main

P831  New Developments At CGGC: The Integrated Web Resource For Sorghum
            Alan R. Gingle

P832  Mapping Relationships Among Soybean Genomic Features
            C Langin

P833  The Solanaceae Genomics Network (SGN): Data, Methods, Tools And The Tomato Genome
            Beth A. Skwarecki

P834  GrainGenes 2.0: An Integrated Resource For The Triticeae
            David E. Matthews

P835  GrainGenes Maps : Visualizing The Triticeae Genome
            Victoria Carollo

P836  Trichome - An Online Bioinformatics Resource For Trichome Genomics
            Xuechun Zhao

P837  The Cattle EST Gene Family Database
            Anand Venkatraman

P838  A Comprehensive Sage Database And Bioinformatics Tool Resource For The Analysis Of Bovine Gamma/Delta T Cells
            Jill C. Graff

P839  PigQTLDB - A Pig QTL Database
            Hu Zhi-liang

P840  BeeBase: The Honey Bee Model Organism Database
            Justin T. Reese

Poster: Software

P841  Blast2GO: A Universal Annotation And Visualization Tool For Functional Genomics Research
            Ana Conesa

P842  Multidimensional Comparative Annotation Tool (MuDCAT): 3D Viewer For Comparing Multiple QTL Maps
            Robert T Ball

P843  FlexQTL Software: Efficient Estimation Of Identity By Descent Probabilities And QTL Mapping In Pedigreed Populations
            Marco C.A.M. Bink

P844  Selected Bioinformatics Tools For Sequencing And Data Analysis Developed At ACGT
            Axin Hua

P845  Genemarker Software Package For AFLP And Genotyping Data Analysis
            

P846  "A Comparison Of Multiple Sequence Alignment Programs And The Effect Of Alignment On Phylogenetic Quality"
            Kevin G. Beckmann

P847  Identifying Plant Paralogs And Orthologs Using Complete Linkage Hierarchical Clustering
            Nathan J Olson

P848  An Interactive Web-Based Multiple Sequence Alignment Viewer With Polymorphism Analysis Support
            Payan Canaran

P850  GMOD: The Generic Model Organism Database Project
            Scott J. Cain

P851  Comparative Annotation: Exploiting A Hidden Wealth
            Stephane M. Rombauts

P852  Development A Software Program To Dynamically Create Repetative Element Databases For Repeatmasker
            Arian Smit

P853  Seq2GO: A Tool For Visualization And Interpretation Of Genomic Data
            William G. Spollen

P854  A Web-Based Tool For Thoroughly Searching Potential siRNA Off-Target Genes
            Yuanji Zhang

P855  ELF-Walking: Electronic Flanking Walking For Large Scale Cloning Of Full-Length cDNA Sequences Combined With Ortholog Identification And Comparative Annotation
            Zhihua Jiang

Poster: Algorithms

P856  An Algorithm To Detect Coding Region, Frame, Chimera And Contamination In EST And Genome Sequences
            Sucheta Tripathy

P857  A New Approach Of QTL Mapping Analysis Of Selective DNA Pooling Experiments
            Zeev Frenkel

P858  Which Definition Of A Domain Works Best?
            Anne M. Denton

P859  Discrimination Of Multiple-Band Peaks In Capillary Fingerprinting Chromatograms
            Frank M. You

P860  Optimization Of Selective Phenotyping For QTL Mapping
            Natalia de Leon

P862  Efficient Selection Of Unique And Popular Oligos For Large EST Databases
            Jie Zheng

P863  The Soybean Gbrowse Database Maps Relationships Between Soybean Genomic Features.
            C Langin

P864  in silico Mapping From Phenotypic, Pedigree, And Genomic Data In Self-Pollinated Crops
            Martin Arbelbide

P865  An Interval Mapping Method For Categorical Traits
            Takeshi Hayashi

P866  Bayesian Poisson Modeling Strategies For Evaluating Differential Gene Expression In cDNA Tag Sampling Experiments
            Xiao-Lin Wu

P867  Development Of Genome Analysis Tool Using Scanning Near-Field Optical / Atomic Force Microscopy
            Yoshitaka Suetsugu

P868  Fine QTL Mapping Using Combined Multipletrait-Multilocus Or Multipleenvironment-Multilocus Analyses
            Ori Orion

Computer: Poster and Demo

P869  Web Presentation Of Plant Genome Resources
            Brian J. Smith-White

P870  Gramene: A Comparative Mapping Resource For The Grasses
            Molly A Fogleman

P871  The International Rice Information System (IRIS): An Evolving Resource Cross-Linking Rice Germplasm, Phenotype, Genomics And Genotype Information
            Richard M. Bruskiewich

P872  MaizeGDB Community Curation Tools
            Carolyn J. Lawrence

P873  The Legume Information Resource (LIS): An Integrated Information Resource For Comparative Legume Biology
            Michael D. Gonzales

P874  Emperical Evaluation Of PathBinderH
            LaRon M. Hughes

P875  The Genome Browser For Soybean: Displaying A Sequence Framework And Physical Map.
            Kay Shopinski

P876  SynBrowse: A Synteny Browser For Comparative Sequence Analysis
            Xiaokang Pan

P877  The Bovine QTL Viewer: A Web Accessible Database Of Bovine Quantitative Trait Loci.
            Pavana Polineni

P878  BarleyBase – Putting Large-Scale Plant Expression Profiling Data Into A Functional Genomics Context
            Lishuang Shen

P879  The Phytophthora Functional Genomics Database (PFGD)
            Kamal Gajendran

P880  The PowerAtlas: A Power And Sample Size Atlas For Microarray Research Based Upon 458 Public Datasets
            Grier P Page

P882  PlantTribes: A Global Classification For Arabidopsis And Rice Proteins
            Kerr Wall

P883  BIRCH: A Network-Accessible Bioinformatics Platform
            Brian Fristensky

P884  LUCY2: An Interactive DNA Sequence Quality Trimming And Vector Removal Tool
            Song Li

P885  Easy Perl Programming Using VECT: The Visual Extraction And Conversion Tool
            Hui-Hsien Chou

P886  GRAMA: Genetic Mapping Analysis Of Temperature Gradient Capillary Electrophoresis (TGCE) Data
            Philip M. Maher

P887  Multilocus Consensus Genetic Maps: Formulation, Algorithms, And Results
            David Mester

P889  An Enhanced Germplasm Web Resource For The Arabidopsis Community
            Simon JB Jupp

P890  Affymetrix Services At NASC
            David J Craigon

Computer: Demo Only

C001  Public Domain Genome/Proteome Analysis Resources
            Sandra E. Orchard

C002  TASSEL: A Database-Aware Tool For Association & Diversity Analysis
            Dallas E Kroon

C003  Using TAIR For Mining Arabidopsis Gene Expression And Metabolic Pathways.
            Leonore Reiser