Computer Demos PAG-XI

Computer Demonstrations

Computer system demonstrations will be conducted all week in the "computer room", located in the California Room.

The schedule of computer demonstrations is as follows:


Monday Afternoon, January 13, 2002 -- 1:00 pm - 3:45 pm

Speakers:

Databases


1:00 pm - 1:20 pm David Garippa, Jackson Laboratory

(dmg@informatics.jax.org)
Mouse Genome Informatics (http://www.informatics.jax.org): An Integrated Resource for Comparative Genomics

1:20 pm - 1:40 pm David Lightfoot, Southern Illinois University

(ga4082@siu.edu)
Accessing the Soybean Integrated Physical and Genetic Map

1:40 pm - 2:00 pm Jian Yang, Noble Foundation

(jyang@noble.org)
Bioinformatics Systems for Medicago truncatula Genomics

2:00 pm - 2:20 pm James C Estill, University of Georgia

(jestill@uga.edu)
BACMan : BAC Data Management for High Throughput Physical Mapping of Genomes

2:20 pm - 2:40 pm Alexander Kozik, University of California - Davis

(akozik@atgc.org)
Lettuce/Sunflower EST CGPDB Project. Data Analysis, Assembly Visualization and Validation

2:40 pm - 3:00 pm Kerr Wall, Penn State University

(pkerrwall@psu.edu)
Bioinformatic Solutions in the Floral Genome Project

3:00 pm - 3:20 pm Shannon Schlueter, Iowa State University

(sds@iastate.edu)
PlantGDB - Plant Genome Database and Analysis Tools

3:20 pm - 3:40 pm Lei Liu, University of Illinois

(leiliu@uiuc.edu)
IMAD: A MIAME-Compliant Microarray Database


Tuesday Evening, January 14, 2002 -- 8:00 pm - 10:30 pm

Databases, Part 2

Speakers:

8:00 pm - 8:20 pm Immanuel V Yap, Cornell University

(ivy1@cornell.edu)
Gramene: Comparative Genomics for Rice and Other Cereals

8:20 pm - 8:30 pm Yukiko Yamazaki, National Institute of Genetics

(yyamazak@lab.nig.ac.jp)
Oryzabase - Integrated Rice Science Database

8:30 pm - 8:40 pm Nori Kurata, National Institute of Genetics

(nkurata@lab.nig.ac.jp)
A Database for Rice Organ Development with Cell and Gene Markers, Integrated in the Oryzabase

8:40 pm - 9:00 pm Trent Seigfried, Iowa State University

(devolver@iastate.edu)
MaizeGDB: Building a Next Generation Maize Database

9:00 pm - 9:20 pm Shibo Zhang, University of California - Berkeley

(shibo@nature.berkeley.edu)
A Database of Coding Sequences Conservation Between Rice and Nonrice Cereals, and Arabidopsis

9:20 pm - 9:40 pm Terry M. Casstevens, North Carolina State University

(terry_casstevens@hotmail.com)
GDPC: The Genomic Diversity and Phenotype Connection: Middleware for Genomic Diversity and Phenotypic Data

9:40 pm - 10:00 pm John Garbe, University of Minnesota

(jgarbe@umn.edu)
Locusmap, a Linkage Map Construction Tool for Loci with Various Inheritance Modes


Wednesday Afternoon, January 15, 2002 -- 1:00 pm - 6:15 pm

Mapping

Speakers:

1:00 pm - 1:20 pm Hector Sanchez-Villeda, University of Missouri

(sanchezvilledah@missouri.edu)
The LIMS Scoring Tool for Maize Mapping Project

1:20 pm - 1:40 pm James C Nelson, Kansas State University

(jcn@ksu.edu)
Least-Energy Linkage Mapping

1:40 pm - 2:00 pm Abraham Korol, University of Haifa

(korol@esti.haifa.ac.il)
MultiQTL, an Interactive Package for Genetic Mapping

2:00 pm - 2:20 pm Shengchu Wang, North Carolina State University

(swang@statgen.ncsu.edu)
Windows QTL Cartographer 2.0: Analyzing Genetic Architecture of Quantitative Traits

Map Viewing

2:20 pm - 2:40 pm Reinhard Simon, International Potato Center

(r.simon@cgiar.org)
IntiMap - A Program for Comparing and Publishing Genomic Maps

2:40 pm - 3:00 pm Brian Smith-White, NIH/NCBI

(smtwhite@ncbi.nlm.nih.gov)
Web Page Presentation of Plant Genetic Maps

3:00 pm - 3:20 pm Christopher T Lewis, AAFC

(lewisct@agr.gc.ca)
BioViz: Brassica Arabidopsis Comparative Genome Browser - Use of an SVG GUI for Comparative Genome Browsing

3:20 pm - 3:40 pm Zhiwei Fang, University of Missouri

(fangz@missouri.edu)
iMap: A Display Tool for the Integrated Genetic and Physical Map of Maize

Analyzing

3:40 pm - 4:00 pm Travis Banks, AAFC

(tbanks@agr.gc.ca)
Developing a Virtual Wheat Physical Map

4:00 pm - 4:20 pm Martina Stromvik, University of Minnesota

(stromvik@ccgb.umn.edu)
Soybean SAGE Tag Data Mining Using the TableView Software

4:20 pm - 4:40 pm Victor A. Albert, University of Oslo

(victor.albert@nhm.uio.no)
Phylogenetic Analyisis of Microarray Expression Profiles

4:40 pm - 5:00 pm Timothy Close, University of California - Riverside

(timothy.close@ucr.edu)
HarvEST: A Portable EST Database Viewer

5:00 pm - 6:15 pm Shannon Schlueter, and Trent Seigfried, Iowa State University

(sds@iastate.edu)
(devolver@iastate.edu)
Tutorial on PlantGDB and MaizeGDB


It is expected that at least 20 computers will be available for e-mail, telnet, and web access.

Should you wish to demo any computer system and/or present an "electronic" poster during the meeting click "Computer Demonstration and Poster" or "Demonstration Only" under the Special Options section on the Abstract submissions form.
Please note that any software which is demonstrated at PAG-XI must be available to the scientific community (either as freeware or shareware).

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This page last updated Thursday, 19-Dec-2002 00:26:05 EST